Project name: SSNA1 [mutate: EK20A, EK21A, KE112A, KE105A, RE117A]

Status: done

Started: 2024-07-04 12:36:23
Settings
Chain sequence(s) A: MTQQGAALQNYNNELVKCIEELCQKREELCRQIQEEEDEKQRLQNEVRQLTEKLARVNENLARKIASRNEFDRTIAETEAAYLKILESSQTLLSVLKREAGNLTKATAPDQKSSGGRDS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues EK20A,EK21A,KE105A,KE112A,RE117A
Energy difference between WT (input) and mutated protein (by FoldX) 1.84907 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:01:06)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:02:31)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:27)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:28)
Show buried residues

Minimal score value
-5.71
Maximal score value
1.6916
Average score
-1.8191
Total score value
-216.4754

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.3055
2 T A -0.5119
3 Q A -1.4152
4 Q A -1.3524
5 G A -0.9246
6 A A -1.0088
7 A A -0.8760
8 L A -0.4918
9 Q A -2.0091
10 N A -1.8889
11 Y A -0.4847
12 N A -1.5867
13 N A -1.8324
14 E A -1.9074
15 L A -0.1668
16 V A 0.5131
17 K A -1.0945
18 C A -0.1414
19 I A 0.9710
20 K A -1.7741 mutated: EK20A
21 K A -2.4514 mutated: EK21A
22 L A -1.4037
23 C A -1.9487
24 Q A -3.4618
25 K A -3.9320
26 R A -3.9013
27 E A -3.6975
28 E A -3.5155
29 L A -1.5488
30 C A -1.7318
31 R A -3.7340
32 Q A -3.0395
33 I A -1.9947
34 Q A -3.8305
35 E A -5.0359
36 E A -5.7100
37 E A -5.6436
38 D A -5.2345
39 E A -5.6895
40 K A -5.6954
41 Q A -4.9885
42 R A -4.7992
43 L A -2.8355
44 Q A -3.1828
45 N A -3.7775
46 E A -3.1164
47 V A -1.0908
48 R A -2.9006
49 Q A -2.5380
50 L A -1.0174
51 T A -1.1956
52 E A -2.3019
53 K A -1.6169
54 L A -0.6039
55 A A -1.5749
56 R A -2.4944
57 V A -0.9296
58 N A -2.2309
59 E A -3.2209
60 N A -2.3182
61 L A -1.1892
62 A A -1.7833
63 R A -2.8865
64 K A -2.6930
65 I A -0.5185
66 A A -1.4817
67 S A -2.1319
68 R A -2.8949
69 N A -2.6066
70 E A -2.5617
71 F A -0.6553
72 D A -2.4727
73 R A -2.9168
74 T A -1.3602
75 I A 0.0385
76 A A -1.3166
77 E A -2.1040
78 T A -1.1477
79 E A -1.4817
80 A A -0.7780
81 A A -0.0903
82 Y A 0.5317
83 L A 0.3948
84 K A -0.8281
85 I A 1.1929
86 L A 0.7378
87 E A -1.2751
88 S A -0.2603
89 S A 0.2751
90 Q A -0.5180
91 T A 0.6623
92 L A 1.6916
93 L A 0.8751
94 S A 0.2896
95 V A 1.0355
96 L A 0.2060
97 K A -1.7887
98 R A -2.5790
99 E A -2.6672
100 A A -1.7159
101 G A -2.1685
102 N A -2.5265
103 L A -0.6448
104 T A -1.1318
105 E A -2.0325 mutated: KE105A
106 A A -0.8924
107 T A -0.6704
108 A A -1.1315
109 P A -1.9364
110 D A -3.1026
111 Q A -3.1331
112 E A -3.2584 mutated: KE112A
113 S A -2.0336
114 S A -1.5589
115 G A -1.8260
116 G A -2.3023
117 E A -3.1199 mutated: RE117A
118 D A -3.0115
119 S A -1.6112
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018