| Chain sequence(s) |
A: FTGHKTF
C: FTGHKTF B: FTGHKTF E: FTGHKTF D: FTGHKTF G: FTGHKTF F: FTGHKTF I: FTGHKTF H: FTGHKTF K: FTGHKTF J: FTGHKTF L: FTGHKTF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:47)
[INFO] Main: Simulation completed successfully. (00:02:50)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 1.4274 | |
| 2 | T | A | 0.7159 | |
| 3 | G | A | -0.0782 | |
| 4 | H | A | 0.0000 | |
| 5 | K | A | -0.0915 | |
| 6 | T | A | 1.2949 | |
| 7 | F | A | 3.0733 | |
| 1 | F | B | 1.8674 | |
| 2 | T | B | 0.7273 | |
| 3 | G | B | -0.2346 | |
| 4 | H | B | -0.8603 | |
| 5 | K | B | -0.9817 | |
| 6 | T | B | 0.6837 | |
| 7 | F | B | 2.3969 | |
| 1 | F | C | 1.9258 | |
| 2 | T | C | 0.7601 | |
| 3 | G | C | -0.2008 | |
| 4 | H | C | -0.7580 | |
| 5 | K | C | -0.5739 | |
| 6 | T | C | 0.7115 | |
| 7 | F | C | 2.3999 | |
| 1 | F | D | 1.3969 | |
| 2 | T | D | 0.7025 | |
| 3 | G | D | -0.1223 | |
| 4 | H | D | 0.0000 | |
| 5 | K | D | -0.1768 | |
| 6 | T | D | 1.2114 | |
| 7 | F | D | 2.8957 | |
| 1 | F | E | 1.2317 | |
| 2 | T | E | 0.4880 | |
| 3 | G | E | -0.0915 | |
| 4 | H | E | 0.0000 | |
| 5 | K | E | 0.0525 | |
| 6 | T | E | 1.2021 | |
| 7 | F | E | 2.9977 | |
| 1 | F | F | 1.3610 | |
| 2 | T | F | 0.6474 | |
| 3 | G | F | -0.0409 | |
| 4 | H | F | 0.0000 | |
| 5 | K | F | -0.0193 | |
| 6 | T | F | 0.9905 | |
| 7 | F | F | 2.8153 | |
| 1 | F | G | 1.5294 | |
| 2 | T | G | 0.7453 | |
| 3 | G | G | -0.0953 | |
| 4 | H | G | 0.0000 | |
| 5 | K | G | -0.2892 | |
| 6 | T | G | 0.8898 | |
| 7 | F | G | 2.4940 | |
| 1 | F | H | 1.9188 | |
| 2 | T | H | 0.5984 | |
| 3 | G | H | -0.4067 | |
| 4 | H | H | -0.7179 | |
| 5 | K | H | -0.7877 | |
| 6 | T | H | 0.3402 | |
| 7 | F | H | 2.2395 | |
| 1 | F | I | 1.8204 | |
| 2 | T | I | 0.4714 | |
| 3 | G | I | -0.6549 | |
| 4 | H | I | -1.2074 | |
| 5 | K | I | -1.3238 | |
| 6 | T | I | 0.1722 | |
| 7 | F | I | 2.1968 | |
| 1 | F | J | 1.4645 | |
| 2 | T | J | 0.6571 | |
| 3 | G | J | -0.2560 | |
| 4 | H | J | 0.0000 | |
| 5 | K | J | -0.5099 | |
| 6 | T | J | 0.7973 | |
| 7 | F | J | 2.6273 | |
| 1 | F | K | 1.3438 | |
| 2 | T | K | 0.6343 | |
| 3 | G | K | -0.0382 | |
| 4 | H | K | 0.0000 | |
| 5 | K | K | 0.0004 | |
| 6 | T | K | 1.2188 | |
| 7 | F | K | 3.0061 | |
| 1 | F | L | 1.2554 | |
| 2 | T | L | 0.4734 | |
| 3 | G | L | -0.0224 | |
| 4 | H | L | 0.0000 | |
| 5 | K | L | 0.0715 | |
| 6 | T | L | 1.4696 | |
| 7 | F | L | 3.2099 |