| Chain sequence(s) |
A: GGGHKGG
C: GGGHKGG B: GGGHKGG D: GGGHKGG input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:18)
[INFO] Main: Simulation completed successfully. (00:00:19)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.6356 | |
| 2 | G | A | -1.7366 | |
| 3 | G | A | -2.3257 | |
| 4 | H | A | -2.8016 | |
| 5 | K | A | -3.2683 | |
| 6 | G | A | -2.3611 | |
| 7 | G | A | -1.9469 | |
| 1 | G | B | -1.6824 | |
| 2 | G | B | -2.2953 | |
| 3 | G | B | -2.4812 | |
| 4 | H | B | -3.1283 | |
| 5 | K | B | -3.4431 | |
| 6 | G | B | -2.8210 | |
| 7 | G | B | -1.8862 | |
| 1 | G | C | -1.5719 | |
| 2 | G | C | -2.2076 | |
| 3 | G | C | -2.2252 | |
| 4 | H | C | -2.9919 | |
| 5 | K | C | -3.3878 | |
| 6 | G | C | -2.7814 | |
| 7 | G | C | -1.9329 | |
| 1 | G | D | -1.6186 | |
| 2 | G | D | -1.9815 | |
| 3 | G | D | -2.5324 | |
| 4 | H | D | -2.9742 | |
| 5 | K | D | -3.3722 | |
| 6 | G | D | -2.4960 | |
| 7 | G | D | -2.0969 |