Project name: query_structure

Status: done

Started: 2026-03-17 01:14:34
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Chain sequence(s) A: VSDVPRDLEVVAATPTSLLISWDAPSSFRNYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTRRENFSKPISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:59)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:00)
Show buried residues

Minimal score value
-3.8291
Maximal score value
1.5641
Average score
-0.9528
Total score value
-86.7093

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.5234
2 S A 0.1083
3 D A -0.5738
4 V A -0.6302
5 P A 0.0000
6 R A -3.0656
7 D A -3.3109
8 L A -2.1062
9 E A -2.0140
10 V A 0.1421
11 V A 1.5641
12 A A 0.9006
13 A A 0.3223
14 T A -0.5258
15 P A -1.0916
16 T A -0.9765
17 S A -0.5271
18 L A 0.0000
19 L A 0.7497
20 I A 0.0000
21 S A -1.1019
22 W A 0.0000
23 D A -3.2363
24 A A -2.1038
25 P A -0.9718
26 S A -0.7709
27 S A -0.6899
28 F A 0.0000
29 R A -2.5479
30 N A -1.9645
31 Y A -1.1098
32 Y A 0.0000
33 R A -0.4581
34 I A 0.0000
35 T A -0.4509
36 Y A -0.2339
37 G A 0.0000
38 E A -1.7285
39 T A -1.4350
40 G A -1.3198
41 G A -1.4849
42 N A -1.5462
43 S A -0.8643
44 P A -0.2844
45 V A 0.5066
46 Q A -0.7054
47 E A -1.4159
48 F A -0.5675
49 T A -0.2913
50 V A 0.0000
51 P A -1.1151
52 G A -1.4931
53 S A -1.6035
54 K A -2.2607
55 S A -1.5437
56 T A -0.7624
57 A A 0.0000
58 T A 0.2381
59 I A 0.0000
60 S A -0.6597
61 G A -1.0292
62 L A 0.0000
63 K A -2.4059
64 P A -1.6598
65 G A -1.3997
66 V A -1.5919
67 D A -2.5746
68 Y A 0.0000
69 T A -0.9008
70 I A 0.0000
71 T A -0.3382
72 V A 0.0000
73 Y A -0.0214
74 A A 0.0000
75 V A 0.0000
76 T A -2.5246
77 R A -3.6773
78 R A -3.8291
79 E A -3.5184
80 N A -2.4885
81 F A -0.3302
82 S A -0.5518
83 K A -1.4344
84 P A -0.6511
85 I A -0.8610
86 S A -0.8652
87 I A -0.7379
88 N A -1.8417
89 Y A -1.5907
90 R A -2.7045
91 T A -1.6938
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Laboratory of Theory of Biopolymers 2018