Chain sequence(s) |
A: SLRNLWRDYKVLVVMVPLVGLIHLGWYRIS
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
Dynamic mode | No |
Automated mutations | No |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:03) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:03) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:06) [INFO] runJob: Creating pdb object from: input.pdb (00:00:06) [INFO] FoldX: Starting FoldX energy minimalization (00:00:06) [INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:24) [CRITICAL] pyMol: Pymol encountered an error: /bin/sh: pymol: command not found Movie creation failed. (00:00:24) [INFO] Main: Simulation completed successfully. (00:00:24) |
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan3D score | mutation |
---|---|---|---|---|
residue index | residue name | chain | Aggrescan3D score | |
2 | S | A | -0.4416 | |
3 | L | A | 0.2392 | |
4 | R | A | -2.0443 | |
5 | N | A | -2.1727 | |
6 | L | A | -0.3499 | |
7 | W | A | -0.6119 | |
8 | R | A | -2.5659 | |
9 | D | A | -1.6126 | |
10 | Y | A | 0.4016 | |
11 | K | A | -0.4713 | |
12 | V | A | 2.2447 | |
13 | L | A | 2.9712 | |
14 | V | A | 2.3121 | |
15 | V | A | 2.9385 | |
16 | M | A | 3.4168 | |
17 | V | A | 3.6214 | |
18 | P | A | 2.6994 | |
19 | L | A | 3.4614 | |
20 | V | A | 3.0047 | |
21 | G | A | 2.2703 | |
22 | L | A | 3.3885 | |
23 | I | A | 2.8941 | |
24 | H | A | 1.9739 | |
25 | L | A | 2.1914 | |
26 | G | A | 1.9690 | |
27 | W | A | 2.5000 | |
28 | Y | A | 2.0309 | |
29 | R | A | 0.3002 | |
30 | I | A | 1.9020 | |
32 | S | A | 0.2727 |