Project name: pep3

Status: done

Started: 2024-06-25 22:52:13
Settings
Chain sequence(s) A: GIGGKILSGFKDLLKGAAKALVKTVLFFSKKD
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:31)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:32)
Show buried residues

Minimal score value
-2.4987
Maximal score value
2.7365
Average score
0.1247
Total score value
3.9888

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A 0.1024
2 I A 1.4795
3 G A 0.4870
4 G A 0.0456
5 K A -0.2720
6 I A 1.6428
7 L A 1.3723
8 S A 0.0303
9 G A 0.0217
10 F A 0.9944
11 K A -1.0788
12 D A -1.5003
13 L A 0.2063
14 L A -0.4687
15 K A -2.1420
16 G A -1.3169
17 A A -0.5632
18 A A -0.6665
19 K A -1.4526
20 A A -0.1927
21 L A 1.4435
22 V A 1.6048
23 K A 0.3997
24 T A 1.8376
25 V A 2.7365
26 L A 2.2800
27 F A 1.8167
28 F A 1.6590
29 S A -0.1153
30 K A -1.6793
31 K A -2.2243
32 D A -2.4987
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Laboratory of Theory of Biopolymers 2018