Project name: 5132a75b249bc76

Status: done

Started: 2026-06-22 16:05:10
Settings
Chain sequence(s) B: EAAVKALKEKAKELEKRAEEYAAKNPELAAVLKKYAAALKKAAEELEKAL
input PDB
Selected Chain(s) B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with B chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:22)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:22)
Show buried residues

Minimal score value
-4.772
Maximal score value
0.9684
Average score
-2.1394
Total score value
-106.9694

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E B -2.2172
2 A B -1.5669
3 A B -1.2488
4 V B 0.0000
5 K B -3.4267
6 A B -2.2024
7 L B -2.4712
8 K B -3.5243
9 E B -4.0348
10 K B -3.5710
11 A B 0.0000
12 K B -4.3229
13 E B -4.0292
14 L B -3.2244
15 E B -3.9870
16 K B -4.7720
17 R B -4.2143
18 A B 0.0000
19 E B -4.2953
20 E B -3.9970
21 Y B -2.8174
22 A B -2.5847
23 A B -1.7082
24 K B -2.5542
25 N B -2.1429
26 P B -1.6427
27 E B -1.5783
28 L B -0.9623
29 A B 0.0000
30 A B -0.5056
31 V B 0.9684
32 L B -0.5562
33 K B -1.8062
34 K B -0.8641
35 Y B 0.3153
36 A B 0.0000
37 A B -1.1624
38 A B -0.9123
39 L B -1.7886
40 K B -3.0175
41 K B -3.0923
42 A B -2.4897
43 A B 0.0000
44 E B -4.3312
45 E B -3.8867
46 L B -2.4949
47 E B -3.8711
48 K B -2.9655
49 A B -1.1774
50 L B -0.2353
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018