Project name: 515b8e58e5f7ea

Status: done

Started: 2026-02-12 13:46:57
Settings
Chain sequence(s) A: FGKGHGF
C: FGKGHGF
B: FGKGHGF
E: FGKGHGF
D: FGKGHGF
G: FGKGHGF
F: FGKGHGF
I: FGKGHGF
H: FGKGHGF
K: FGKGHGF
J: FGKGHGF
L: FGKGHGF
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:06:02)
[INFO]       Main:     Simulation completed successfully.                                          (00:06:05)
Show buried residues

Minimal score value
-2.4256
Maximal score value
3.9286
Average score
0.4249
Total score value
35.6952

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 F A 3.5155
2 G A 1.7728
3 K A -0.6939
4 G A 0.0000
5 H A -1.3287
6 G A 0.0000
7 F A 2.1591
1 F B 3.9286
2 G B 2.0913
3 K B -0.3903
4 G B 0.0000
5 H B -1.3452
6 G B 0.0000
7 F B 2.0945
1 F C 3.6366
2 G C 0.0000
3 K C -0.8846
4 G C 0.0000
5 H C -1.5445
6 G C 0.0000
7 F C 1.9922
1 F D 2.7463
2 G D 0.5266
3 K D -1.5646
4 G D -1.9597
5 H D -1.5877
6 G D -0.0073
7 F D 2.2758
1 F E 3.0669
2 G E 1.0085
3 K E -1.2591
4 G E 0.0000
5 H E -1.6413
6 G E 0.0000
7 F E 2.4658
1 F F 3.1711
2 G F 1.4896
3 K F -0.6111
4 G F 0.0000
5 H F -1.2997
6 G F 0.0000
7 F F 2.2738
1 F G 3.4455
2 G G 1.4493
3 K G -0.6651
4 G G 0.0000
5 H G -1.1707
6 G G 0.0000
7 F G 2.1264
1 F H 3.2585
2 G H 0.0000
3 K H -0.9377
4 G H 0.0000
5 H H -1.4669
6 G H 0.0000
7 F H 1.9512
1 F I 3.4120
2 G I 1.2730
3 K I -1.0975
4 G I 0.0000
5 H I -1.8840
6 G I 0.0000
7 F I 1.5683
1 F J 2.8656
2 G J 1.0903
3 K J -1.6043
4 G J -2.4256
5 H J -2.2648
6 G J -0.2910
7 F J 2.1085
1 F K 2.3874
2 G K 0.7249
3 K K -1.7413
4 G K -2.1251
5 H K -1.9149
6 G K -0.4058
7 F K 1.7809
1 F L 3.3968
2 G L 0.0000
3 K L -1.4737
4 G L 0.0000
5 H L -1.9187
6 G L 0.0000
7 F L 2.1464
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018