| Chain sequence(s) |
A: FGKGHGF
C: FGKGHGF B: FGKGHGF E: FGKGHGF D: FGKGHGF G: FGKGHGF F: FGKGHGF I: FGKGHGF H: FGKGHGF K: FGKGHGF J: FGKGHGF L: FGKGHGF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:06:02)
[INFO] Main: Simulation completed successfully. (00:06:05)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 3.5155 | |
| 2 | G | A | 1.7728 | |
| 3 | K | A | -0.6939 | |
| 4 | G | A | 0.0000 | |
| 5 | H | A | -1.3287 | |
| 6 | G | A | 0.0000 | |
| 7 | F | A | 2.1591 | |
| 1 | F | B | 3.9286 | |
| 2 | G | B | 2.0913 | |
| 3 | K | B | -0.3903 | |
| 4 | G | B | 0.0000 | |
| 5 | H | B | -1.3452 | |
| 6 | G | B | 0.0000 | |
| 7 | F | B | 2.0945 | |
| 1 | F | C | 3.6366 | |
| 2 | G | C | 0.0000 | |
| 3 | K | C | -0.8846 | |
| 4 | G | C | 0.0000 | |
| 5 | H | C | -1.5445 | |
| 6 | G | C | 0.0000 | |
| 7 | F | C | 1.9922 | |
| 1 | F | D | 2.7463 | |
| 2 | G | D | 0.5266 | |
| 3 | K | D | -1.5646 | |
| 4 | G | D | -1.9597 | |
| 5 | H | D | -1.5877 | |
| 6 | G | D | -0.0073 | |
| 7 | F | D | 2.2758 | |
| 1 | F | E | 3.0669 | |
| 2 | G | E | 1.0085 | |
| 3 | K | E | -1.2591 | |
| 4 | G | E | 0.0000 | |
| 5 | H | E | -1.6413 | |
| 6 | G | E | 0.0000 | |
| 7 | F | E | 2.4658 | |
| 1 | F | F | 3.1711 | |
| 2 | G | F | 1.4896 | |
| 3 | K | F | -0.6111 | |
| 4 | G | F | 0.0000 | |
| 5 | H | F | -1.2997 | |
| 6 | G | F | 0.0000 | |
| 7 | F | F | 2.2738 | |
| 1 | F | G | 3.4455 | |
| 2 | G | G | 1.4493 | |
| 3 | K | G | -0.6651 | |
| 4 | G | G | 0.0000 | |
| 5 | H | G | -1.1707 | |
| 6 | G | G | 0.0000 | |
| 7 | F | G | 2.1264 | |
| 1 | F | H | 3.2585 | |
| 2 | G | H | 0.0000 | |
| 3 | K | H | -0.9377 | |
| 4 | G | H | 0.0000 | |
| 5 | H | H | -1.4669 | |
| 6 | G | H | 0.0000 | |
| 7 | F | H | 1.9512 | |
| 1 | F | I | 3.4120 | |
| 2 | G | I | 1.2730 | |
| 3 | K | I | -1.0975 | |
| 4 | G | I | 0.0000 | |
| 5 | H | I | -1.8840 | |
| 6 | G | I | 0.0000 | |
| 7 | F | I | 1.5683 | |
| 1 | F | J | 2.8656 | |
| 2 | G | J | 1.0903 | |
| 3 | K | J | -1.6043 | |
| 4 | G | J | -2.4256 | |
| 5 | H | J | -2.2648 | |
| 6 | G | J | -0.2910 | |
| 7 | F | J | 2.1085 | |
| 1 | F | K | 2.3874 | |
| 2 | G | K | 0.7249 | |
| 3 | K | K | -1.7413 | |
| 4 | G | K | -2.1251 | |
| 5 | H | K | -1.9149 | |
| 6 | G | K | -0.4058 | |
| 7 | F | K | 1.7809 | |
| 1 | F | L | 3.3968 | |
| 2 | G | L | 0.0000 | |
| 3 | K | L | -1.4737 | |
| 4 | G | L | 0.0000 | |
| 5 | H | L | -1.9187 | |
| 6 | G | L | 0.0000 | |
| 7 | F | L | 2.1464 |