Project name: query_structure

Status: done

Started: 2026-03-16 23:24:06
Settings
Chain sequence(s) A: GIPCGESCVFIPCITAAIGCSCKSKVCYRN
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:34)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:34)
Show buried residues

Minimal score value
-1.9868
Maximal score value
2.8528
Average score
0.4217
Total score value
12.6508

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.5687
2 I A 1.0062
3 P A 0.0735
4 C A 0.5085
5 G A -0.1226
6 E A 0.1821
7 S A 0.5987
8 C A 1.2507
9 V A 2.4701
10 F A 2.8528
11 I A 2.0794
12 P A 1.3860
13 C A 1.5412
14 I A 2.2809
15 T A 1.4846
16 A A 1.2055
17 A A 1.4387
18 I A 2.0504
19 G A 0.3927
20 C A 0.0000
21 S A -0.6038
22 C A -0.4800
23 K A -1.9868
24 S A -1.2327
25 K A -0.9783
26 V A -0.6404
27 C A 0.0000
28 Y A -0.7657
29 R A -1.1285
30 N A -1.6437
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018