Project name: 254

Status: done

Started: 2025-06-25 14:26:59
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Chain sequence(s) H: EVQLVESGGGLVQPGGSLRLSCAASGFTFSSSVMFWLRQAPGKGLEWLSTIKPTGSTIYPGSGKGRFTISRDNAKNTLYLQINNLKPEDTALYYCARDIGGTVRGQGTQVTVSS
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:38)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:39)
Show buried residues

Minimal score value
-2.6303
Maximal score value
1.6535
Average score
-0.624
Total score value
-71.1413

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -2.0430
2 V H -1.2004
3 Q H -1.2856
4 L H 0.0000
5 V H 0.4054
6 E H 0.0000
7 S H -0.6544
8 G H -1.1566
9 G H -0.6794
11 G H 0.1622
12 L H 1.1380
13 V H -0.0019
14 Q H -1.4669
15 P H -2.0043
16 G H -1.9385
17 G H -1.5302
18 S H -1.6793
19 L H -1.0987
20 R H -2.0509
21 L H 0.0000
22 S H -0.4859
23 C H 0.0000
24 A H -0.2576
25 A H 0.0000
26 S H -0.8594
27 G H -1.2964
28 F H -0.5984
29 T H -0.3200
30 F H 0.0000
35 S H -0.8313
36 S H -0.5160
37 S H 0.0000
38 V H 0.0000
39 M H 0.0000
40 F H 0.2528
41 W H 0.0000
42 L H 0.3602
43 R H 0.0000
44 Q H -0.7815
45 A H -1.2574
46 P H -1.0132
47 G H -1.4716
48 K H -2.2097
49 G H -1.1866
50 L H 0.0260
51 E H -0.3642
52 W H 0.4083
53 L H 0.0000
54 S H 0.0000
55 T H 0.0000
56 I H 0.0000
57 K H -0.8956
58 P H -0.8509
59 T H -0.5899
63 G H -0.6996
64 S H -0.3868
65 T H 0.1663
66 I H 0.7023
67 Y H -0.0855
68 P H -0.5195
69 G H -1.1623
70 S H -1.0632
71 G H 0.0000
72 K H -2.0088
74 G H -1.7292
75 R H -1.7583
76 F H 0.0000
77 T H -0.8159
78 I H 0.0000
79 S H -0.4882
80 R H -1.1582
81 D H -1.5995
82 N H -1.9834
83 A H -1.5513
84 K H -2.4184
85 N H -2.0357
86 T H -1.1688
87 L H 0.0000
88 Y H -0.5694
89 L H 0.0000
90 Q H -1.3695
91 I H 0.0000
92 N H -2.1851
93 N H -2.4478
94 L H 0.0000
95 K H -2.6303
96 P H -1.9444
97 E H -2.3313
98 D H 0.0000
99 T H -0.8533
100 A H 0.0000
101 L H -0.1276
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H -0.0865
107 D H 0.4001
108 I H 1.6535
114 G H 0.4600
115 G H 0.2318
116 T H 0.1828
117 V H 0.0914
118 R H -0.9906
119 G H -0.7850
120 Q H -1.1908
121 G H 0.0000
122 T H -0.6566
123 Q H -0.8066
124 V H 0.0000
125 T H -0.2385
126 V H 0.0000
127 S H -0.4840
128 S H -0.8768
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Laboratory of Theory of Biopolymers 2018