Project name: testax

Status: done

Started: 2025-04-14 08:38:26
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Chain sequence(s) A: DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNSKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTPYSFGQGTKLEIK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:02)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:02)
Show buried residues

Minimal score value
-2.8248
Maximal score value
1.5007
Average score
-0.6027
Total score value
-68.1018

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 D A -1.3913
2 I A 0.0000
3 V A 1.1856
4 M A 0.0000
5 T A -0.3574
6 Q A 0.0000
7 S A -1.3139
8 P A -1.2717
9 D A -2.3484
10 S A -1.4736
11 L A -0.8839
12 A A -0.8718
13 V A 0.0000
14 S A -1.2467
15 L A -0.5504
16 G A -1.4799
17 E A -2.7132
18 R A -2.8248
19 A A 0.0000
20 T A -0.6214
21 I A 0.0000
22 N A -1.2422
23 C A 0.0000
24 K A -1.5989
25 S A 0.0000
26 S A -0.7773
27 Q A -1.3556
27A S A -0.6958
27B V A 0.0000
27C L A 0.3745
27D Y A 0.4308
27E S A -0.2813
27F S A -0.6907
28 N A -1.2907
29 S A -0.8057
30 K A -0.7574
31 N A 0.0000
32 Y A 0.7242
33 L A 0.0000
34 A A 0.0000
35 W A 0.0000
36 Y A 0.0440
37 Q A 0.0000
38 Q A -1.3050
39 K A -1.8072
40 P A -1.1337
41 G A -1.4075
42 Q A -2.0339
43 P A -1.4447
44 P A -1.2334
45 K A -1.4538
46 L A -0.2722
47 L A 0.0000
48 I A 0.0000
49 Y A 0.2420
50 W A 0.2007
51 A A 0.0000
52 S A -0.4193
53 T A -0.4033
54 R A -1.2229
55 E A -1.1211
56 S A -0.8249
57 G A -0.9777
58 V A -0.9207
59 P A -1.3173
60 D A -2.1226
61 R A -1.4616
62 F A 0.0000
63 S A -0.8313
64 G A -0.5676
65 S A -0.6533
66 G A -1.1064
67 S A -0.9417
68 G A -0.7919
69 T A -1.4602
70 D A -2.2555
71 F A 0.0000
72 T A -0.8525
73 L A 0.0000
74 T A -0.8148
75 I A 0.0000
76 S A -1.8076
77 S A -1.5526
78 L A 0.0000
79 Q A -1.4953
80 A A -1.0564
81 E A -2.0058
82 D A 0.0000
83 V A -1.0205
84 A A 0.0000
85 V A -0.7671
86 Y A 0.0000
87 Y A 0.0554
88 C A 0.0000
89 Q A 0.9291
90 Q A 0.0000
91 Y A 1.1308
92 Y A 0.7414
93 S A 0.1059
94 T A -0.0156
95 P A 0.1335
96 Y A 1.4908
97 S A 1.1277
98 F A 1.5007
99 G A 0.1698
100 Q A -1.3157
101 G A 0.0000
102 T A 0.0000
103 K A -1.6822
104 L A 0.0000
105 E A -1.4173
106 I A -0.9642
107 K A -1.5864
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Laboratory of Theory of Biopolymers 2018