Project name: query_structure

Status: done

Started: 2026-03-17 01:16:35
Settings
Chain sequence(s) A: VSDVPRDLEVVAATPTSLLISWDPPRCRRARYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTSMPRLGIPRKSISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:03)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:03)
Show buried residues

Minimal score value
-3.5804
Maximal score value
1.5082
Average score
-0.8501
Total score value
-80.7639

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.3051
2 S A -0.0417
3 D A -1.2869
4 V A -0.9295
5 P A 0.0000
6 R A -2.4430
7 D A -2.8671
8 L A 0.0000
9 E A -1.9662
10 V A 0.0612
11 V A 1.5082
12 A A 0.8693
13 A A 0.2900
14 T A -0.5522
15 P A -1.1596
16 T A -1.0075
17 S A -0.5512
18 L A 0.0000
19 L A 0.6981
20 I A 0.0000
21 S A -0.9069
22 W A 0.0000
23 D A -2.4865
24 P A -2.2877
25 P A 0.0000
26 R A -2.5987
27 C A -2.1020
28 R A -3.5804
29 R A -3.4217
30 A A -2.3548
31 R A -2.3996
32 Y A -1.0922
33 Y A 0.0000
34 R A -0.6047
35 I A 0.0000
36 T A 0.0000
37 Y A -0.2337
38 G A 0.0000
39 E A -1.4483
40 T A -1.1836
41 G A -1.2091
42 G A -1.3067
43 N A -1.5160
44 S A -0.8282
45 P A -0.2992
46 V A 0.4791
47 Q A -0.7734
48 E A -1.6345
49 F A -0.7175
50 T A -0.2891
51 V A 0.0000
52 P A -1.0815
53 G A 0.0000
54 S A -1.5876
55 K A -1.9377
56 S A -1.2695
57 T A -0.6727
58 A A 0.0000
59 T A 0.2751
60 I A 0.0000
61 S A -0.6680
62 G A -1.0348
63 L A 0.0000
64 K A -2.3604
65 P A -1.6547
66 G A -1.4185
67 V A -1.3821
68 D A -2.0039
69 Y A 0.0000
70 T A -0.7065
71 I A 0.0000
72 T A -0.1561
73 V A 0.0000
74 Y A -0.4190
75 A A 0.0000
76 V A -1.0159
77 T A -1.5715
78 S A -1.1580
79 M A -0.6840
80 P A -0.8398
81 R A -1.2249
82 L A 0.4744
83 G A -0.2698
84 I A -0.0645
85 P A -0.9400
86 R A -2.0996
87 K A -1.4420
88 S A -0.8387
89 I A -0.2852
90 S A -0.2616
91 I A -0.4932
92 N A -1.6893
93 Y A -1.4067
94 R A -2.4964
95 T A -1.5109
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018