Project name: TLFESSM wo I to L

Status: done

Started: 2026-02-10 13:14:35
Settings
Chain sequence(s) H: EVQLLESGGGLVQPGGSLRLSCATSGSIFSINAMGWFRQAPGKQRELVAVITSGGSTIYAESVKGRFTISRDNSKNTVYLQMSSLRPEDTAVYYCNAHVGLKVPTIQELSLGFGSWGQGTMVTVSS
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:24)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:25)
Show buried residues

Minimal score value
-2.6435
Maximal score value
2.2502
Average score
-0.3336
Total score value
-42.0357

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -2.1421
2 V H 0.0000
3 Q H -1.4180
4 L H 0.0000
5 L H 0.8672
6 E H 0.1775
7 S H -0.3409
8 G H -0.7709
9 G H -0.0753
11 G H 0.6366
12 L H 1.3402
13 V H 0.0258
14 Q H -1.3236
15 P H -1.5523
16 G H -1.2833
17 G H -0.7944
18 S H -0.8299
19 L H -0.4091
20 R H -1.2284
21 L H 0.0000
22 S H -0.2711
23 C H 0.0000
24 A H -0.2582
25 T H 0.0000
26 S H -1.0214
27 G H -0.9424
28 S H -0.1049
29 I H 0.5263
30 F H 2.2502
35 S H 0.0000
36 I H 0.0000
37 N H -0.4963
38 A H -0.7233
39 M H 0.0000
40 G H 0.0000
41 W H 0.0000
42 F H 0.4554
43 R H 0.0000
44 Q H -0.9897
45 A H -1.1247
46 P H -0.9580
47 G H -1.3288
48 K H -1.9247
49 Q H -2.1355
50 R H -1.4998
51 E H -0.7825
52 L H 0.6207
53 V H 0.0000
54 A H 0.0000
55 V H 1.1400
56 I H 0.0000
57 T H -0.4828
58 S H -1.0584
59 G H -0.8963
63 G H -0.7616
64 S H -0.0820
65 T H 0.8256
66 I H 1.8385
67 Y H 0.3734
68 A H -0.6494
69 E H -2.2545
70 S H -1.7420
71 V H 0.0000
72 K H -2.3016
74 G H -1.6444
75 R H -1.2785
76 F H 0.0000
77 T H -0.3802
78 I H 0.0000
79 S H -0.4685
80 R H -1.2571
81 D H -1.8851
82 N H -2.3872
83 S H -1.9428
84 K H -2.6435
85 N H -1.8025
86 T H -1.2265
87 V H 0.0000
88 Y H -0.3953
89 L H 0.0000
90 Q H -0.7717
91 M H 0.0000
92 S H -0.8005
93 S H -0.9773
94 L H 0.0000
95 R H -2.3044
96 P H -1.9286
97 E H -2.3466
98 D H 0.0000
99 T H -0.6018
100 A H 0.0000
101 V H 0.3598
102 Y H 0.0000
103 Y H 0.2893
104 C H 0.0000
105 N H 0.0317
106 A H 0.0000
107 H H -0.6228
108 V H 0.0555
109 G H 0.0000
110 L H 1.2443
111 K H 0.0000
111A V H 1.9126
111B P H 0.8061
111C T H 1.2526
112D I H 1.8190
112C Q H 0.5947
112B E H 0.7657
112A L H 1.5020
112 S H 1.0648
113 L H 1.4737
114 G H 0.2068
115 F H 0.3462
116 G H -0.5532
117 S H 0.0000
118 W H 0.0820
119 G H -0.3018
120 Q H -0.7389
121 G H -0.1185
122 T H 0.0741
123 M H 0.6644
124 V H 0.0000
125 T H 0.1453
126 V H 0.0000
127 S H -0.7686
128 S H -0.6993
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018