Project name: 526d4a94f3d46e9

Status: done

Started: 2024-12-20 12:04:16
Settings
Chain sequence(s) H: IVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWFQQKPGQPPKLLIYWASLRESGVSDRFSGSGSGTDFTLTISGLQAEDVAVYYCQQYYSILWTFGQGTKVEIKSTKGPSVFPLAPCTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVES
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:46)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:48)
Show buried residues

Minimal score value
-3.0885
Maximal score value
3.3875
Average score
-0.5056
Total score value
-103.1472

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
2 I H 1.6561
3 V H 1.7588
4 M H 0.0000
5 T H -0.7154
6 Q H 0.0000
7 S H -1.5220
8 P H -1.5229
9 D H -2.6350
10 S H -1.6598
11 L H -0.9388
12 A H -0.5724
13 V H 0.0000
14 S H -0.6735
15 L H 0.2563
16 G H -0.9357
17 E H -2.0438
18 R H -2.5624
19 A H 0.0000
20 T H -0.7225
21 I H 0.0000
22 N H -2.0092
23 C H 0.0000
24 K H -2.0195
25 S H 0.0000
26 S H -0.4600
27 Q H -1.1401
28 S H -0.8922
29 V H 0.0000
30 L H -0.2546
31 Y H -0.1512
32 S H -0.6975
33 S H -0.8927
34 N H -1.5293
35 N H -1.9147
36 K H -1.4123
37 N H -0.3949
38 Y H 0.5134
39 L H 0.0000
40 A H 0.0000
41 W H 0.0000
42 F H 0.1500
43 Q H -0.5009
44 Q H -1.2320
45 K H -1.6612
46 P H -1.0820
47 G H -1.3045
48 Q H -1.7967
49 P H -1.2555
50 P H -1.0164
51 K H -1.0378
52 L H -0.1937
53 L H 0.0000
54 I H 0.0000
55 Y H 0.7024
56 W H 0.5453
57 A H 0.0000
65 S H 0.0747
66 L H 0.6059
67 R H -1.0268
68 E H -0.8601
69 S H -0.7425
70 G H -1.0414
71 V H -1.0078
72 S H -1.3906
74 D H -2.2659
75 R H -1.6561
76 F H 0.0000
77 S H -0.6963
78 G H 0.0000
79 S H -0.6883
80 G H -1.2532
83 S H -1.3010
84 G H -1.1678
85 T H -1.7269
86 D H -2.8083
87 F H 0.0000
88 T H -1.2116
89 L H 0.0000
90 T H -0.7466
91 I H 0.0000
92 S H -1.6958
93 G H -1.5111
94 L H 0.0000
95 Q H -1.3044
96 A H -0.7756
97 E H -1.9738
98 D H 0.0000
99 V H -0.8009
100 A H 0.0000
101 V H -0.9491
102 Y H 0.0000
103 Y H 0.0412
104 C H 0.0000
105 Q H 0.9165
106 Q H 0.0000
107 Y H 2.0507
108 Y H 1.4780
109 S H 2.0371
114 I H 3.1883
115 L H 3.3875
116 W H 3.0966
117 T H 2.0835
118 F H 1.4083
119 G H 0.0000
120 Q H -1.0677
121 G H 0.0000
122 T H 0.0000
123 K H -2.0305
124 V H 0.0000
125 E H -0.6093
126 I H -0.3878
127 K H -1.5303
128 S H -1.2443
129 T H -1.1576
130 K H -1.3222
131 G H -1.4270
132 P H -0.7862
133 S H -0.0794
134 V H 0.0000
135 F H 0.8420
136 P H -0.0395
137 L H 0.6382
138 A H 0.0079
139 P H -0.0209
140 C H 0.5809
141 T H -0.2361
142 A H -0.1775
143 A H 0.0783
144 L H 0.0000
145 G H 0.0000
146 C H 0.0000
147 L H 0.7157
148 V H 0.0000
149 K H -0.2609
150 D H -0.7023
151 Y H 0.0000
152 F H 0.0000
153 P H -1.5458
154 E H -1.7282
155 P H -1.5876
156 V H -1.2600
157 T H -0.9863
158 V H -0.4216
159 S H -0.5289
160 W H 0.0000
161 N H -0.9081
162 S H -0.6775
163 G H -0.5682
164 A H -0.2466
165 L H -0.0739
166 T H -0.3164
167 S H -0.3776
168 G H -0.4750
169 V H -0.0197
170 H H -0.5500
171 T H 0.1891
172 F H 0.8947
173 P H 0.5180
174 A H 0.8511
175 V H 2.1312
176 L H 1.3592
177 Q H 0.3864
178 S H -0.0391
179 S H -0.2994
180 G H -0.1277
181 L H -0.2678
182 Y H 0.0000
183 S H 0.0000
184 L H 0.0000
185 S H 0.6430
186 S H 0.0000
187 V H 0.4999
188 V H 0.0000
189 T H -0.2117
190 V H 0.0000
191 P H -0.5388
192 S H -0.3923
193 S H -0.5784
194 S H -0.7592
195 L H -0.8727
196 G H -1.0766
197 T H -1.0463
198 K H -1.8282
199 T H -1.5761
200 Y H 0.0000
201 T H -1.6788
202 C H 0.0000
203 N H -1.6880
204 V H 0.0000
205 D H -2.6849
206 H H 0.0000
207 K H -3.0885
208 P H -1.9430
209 S H -2.0093
210 N H -2.5135
211 T H -2.1360
212 K H -2.8218
213 V H -1.5475
214 D H -2.3419
215 K H -1.9355
216 R H -2.7560
217 V H 0.0000
218 E H -2.4046
219 S H -0.9639
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Laboratory of Theory of Biopolymers 2018