Project name: 11.07.nb.selen

Status: done

Started: 2025-07-21 08:42:08
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Chain sequence(s) H: QVQLVESGGGLVQPGGSLRLSCAASGDSSFDFTTYSLGWFRQAPGQGLEAVAAISSDGQYTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAASPRPVVRSMKPEEYQYWGQGTLVTVS
T: LTSSERIDKQIRYILDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGFNEETCLVKIITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNASLLTKLQAQNQWLQDMTTHLILRSFKEFLQSSLRALRQM
input PDB
Selected Chain(s) H,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:06:22)
[INFO]       Main:     Simulation completed successfully.                                          (00:06:23)
Show buried residues

Minimal score value
-3.2887
Maximal score value
1.6262
Average score
-0.9724
Total score value
-284.9149

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.7091
2 V H -1.3353
3 Q H -1.2771
4 L H 0.0000
5 V H 1.2089
6 E H 0.0000
7 S H -0.1627
8 G H -0.7833
9 G H 0.1183
10 G H 0.6744
11 L H 1.3321
12 V H 0.0000
13 Q H -1.5360
14 P H -1.9736
15 G H -1.7193
16 G H -1.2365
17 S H -1.4746
18 L H -1.1100
19 R H -2.3690
20 L H 0.0000
21 S H -0.4626
22 C H 0.0000
23 A H -0.1773
24 A H 0.0000
25 S H -1.2395
26 G H -1.7496
27 D H -1.6724
28 S H -0.8569
29 S H -0.4878
30 F H -0.6297
31 D H -0.6932
32 F H 0.0000
33 T H -0.8857
34 T H 0.0000
35 Y H 0.0000
36 S H 0.0000
37 L H 0.0000
38 G H 0.0000
39 W H 0.0000
40 F H 0.0000
41 R H 0.0000
42 Q H -0.6388
43 A H -0.9613
44 P H -0.9794
45 G H -1.2961
46 Q H -1.8087
47 G H -1.1804
48 L H -0.5461
49 E H -0.8891
50 A H -0.6338
51 V H 0.0000
52 A H 0.0000
53 A H 0.0000
54 I H 0.0000
55 S H 0.0000
56 S H 0.0000
57 D H -2.3533
58 G H -1.7465
59 Q H -1.7343
60 Y H -0.7763
61 T H 0.0274
62 Y H 0.2166
63 Y H -0.6442
64 A H -1.2140
65 D H -2.4154
66 S H -1.7856
67 V H 0.0000
68 K H -2.5663
69 G H -1.9216
70 R H -1.9463
71 F H 0.0000
72 T H -1.0683
73 I H 0.0000
74 S H -0.5906
75 R H 0.0000
76 D H -1.9610
77 N H -1.9916
78 S H -1.6337
79 K H -2.4564
80 N H -1.9163
81 T H -1.0523
82 L H 0.0000
83 Y H 0.0000
84 L H 0.0000
85 Q H -1.7749
86 M H 0.0000
87 N H -2.2335
88 S H -1.7064
89 L H 0.0000
90 R H -3.0564
91 A H -2.0987
92 E H -2.4717
93 D H 0.0000
94 T H -0.5514
95 A H 0.0000
96 V H 0.8101
97 Y H 0.0000
98 Y H 0.4166
99 C H 0.0000
100 A H 0.0000
101 A H 0.0000
102 S H 0.0000
103 P H -0.5938
104 R H -0.6539
105 P H 0.0000
106 V H 0.0000
107 V H 0.0000
108 R H -0.8374
109 S H -1.1362
110 M H -1.1786
111 K H -2.5119
112 P H -2.0632
113 E H -2.8901
114 E H -2.3610
115 Y H 0.0000
116 Q H -1.4942
117 Y H -0.5486
118 W H 0.0371
119 G H -0.0109
120 Q H -0.6419
121 G H 0.0000
122 T H 0.6980
123 L H 1.6262
124 V H 0.0000
125 T H 0.2217
126 V H 0.0000
127 S H -0.9587
128 L T 0.4830
129 T T -0.0450
130 S T -0.8280
131 S T -1.1143
132 E T -1.4135
133 R T -0.9632
134 I T 0.0000
135 D T -1.9209
136 K T -1.5364
137 Q T 0.0000
138 I T 0.0000
139 R T -2.3017
140 Y T -1.3792
141 I T 0.0000
142 L T -1.7324
143 D T -2.1854
144 G T -1.1859
145 I T 0.0000
146 S T -1.5909
147 A T -1.3588
148 L T 0.0000
149 R T -2.2759
150 K T -2.9493
151 E T -2.6230
152 T T -2.1883
153 C T -2.6632
154 N T -3.1751
155 K T -3.1187
156 S T -2.0047
157 N T -2.6194
158 M T -1.2449
159 C T -1.9864
160 E T -2.0795
161 S T -1.9244
162 S T -2.1406
163 K T -2.7341
164 E T -2.3856
165 A T -0.7019
166 L T 0.6344
167 A T -0.4225
168 E T -2.2186
169 N T -1.7578
170 N T -2.4282
171 L T -1.5288
172 N T -2.0913
173 L T -1.1582
174 P T -1.5247
175 K T -2.2101
176 M T 0.0000
177 A T -1.7869
178 E T -2.6389
179 K T -2.6308
180 D T 0.0000
181 G T 0.0000
182 C T 0.0000
183 F T -1.0726
184 Q T -1.5440
185 S T -1.1715
186 G T -1.4324
187 F T -1.3439
188 N T -1.9424
189 E T -2.1448
190 E T -2.5793
191 T T -1.4284
192 C T 0.0000
193 L T 0.0000
194 V T -0.3462
195 K T -0.7164
196 I T 0.0000
197 I T 0.0000
198 T T -0.1242
199 G T 0.0000
200 L T 0.0000
201 L T -0.7339
202 E T -1.6243
203 F T 0.0000
204 E T -1.3958
205 V T 0.0000
206 Y T 0.0000
207 L T 0.0000
208 E T -1.4480
209 Y T 0.0000
210 L T 0.0000
211 Q T -2.1011
212 N T -2.3706
213 R T -2.0670
214 F T 0.0000
215 E T -2.7634
216 S T -1.6889
217 S T -1.7183
218 E T -2.6046
219 E T -2.0725
220 Q T -1.4882
221 A T 0.0000
222 R T -1.5147
223 A T -0.9469
224 V T 0.0000
225 Q T 0.0000
226 M T -0.8119
227 S T 0.0000
228 T T 0.0000
229 K T -1.2189
230 V T 0.0000
231 L T 0.0000
232 I T -0.9385
233 Q T -1.7011
234 F T 0.0000
235 L T 0.0000
236 Q T -2.1249
237 K T -2.7613
238 K T -2.3269
239 A T 0.0000
240 K T -3.2887
241 N T -2.8745
242 L T -2.1731
243 D T -2.1957
244 A T -0.9962
245 I T -0.1340
246 T T -0.3612
247 T T -0.5693
248 P T -1.1786
249 D T -1.6217
250 P T -0.9584
251 T T -0.6470
252 T T -0.6005
253 N T -1.0237
254 A T -0.5299
255 S T -0.5038
256 L T -0.4140
257 L T -0.7663
258 T T -1.0222
259 K T -1.8900
260 L T 0.0000
261 Q T -1.8345
262 A T -1.4787
263 Q T -1.7910
264 N T -1.8298
265 Q T -1.5026
266 W T 0.1759
267 L T -0.2884
268 Q T -0.7983
269 D T -0.7420
270 M T 0.0000
271 T T 0.0000
272 T T 0.0000
273 H T -0.9939
274 L T -0.6825
275 I T 0.0000
276 L T 0.0000
277 R T -2.2937
278 S T -2.0475
279 F T 0.0000
280 K T -2.1986
281 E T -2.9198
282 F T 0.0000
283 L T 0.0000
284 Q T -1.8666
285 S T -1.4570
286 S T 0.0000
287 L T -2.1326
288 R T -2.7932
289 A T 0.0000
290 L T 0.0000
291 R T -3.0604
292 Q T -2.5449
293 M T -1.5333
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Laboratory of Theory of Biopolymers 2018