Project name: P01 [mutate: WF3A] [mutate: FW3A, IQ2A, IQ4A, IQ6A, IQ8A, IQ13A] [mutate: QI2A, QI4A, QI6A, QI8A, QI13A] [mutate: WF3A, WF7A, WF14A] [mutate: FY3A, FY7A, FY14A] [mutate: YW3A, YW7A, YW14A, IN2A, IN4A, IN6A, IN8A, IN13A]

Status: done

Started: 2025-10-06 14:12:37
Settings
Chain sequence(s) A: KIYIKIYIKLLKIY
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues YW14A,IN13A,YW3A,IN2A,IN4A,YW7A,IN6A,IN8A
Energy difference between WT (input) and mutated protein (by FoldX) 0.947238 kcal/mol
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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:10)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:02:03)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:13)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:14)
Show buried residues

Minimal score value
-3.6898
Maximal score value
0.3042
Average score
-2.0726
Total score value
-29.016

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -2.9355
2 N A -2.7266 mutated: IN2A
3 W A -1.6792 mutated: YW3A
4 N A -3.0397 mutated: IN4A
5 K A -3.6898
6 N A -2.9431 mutated: IN6A
7 W A -1.7858 mutated: YW7A
8 N A -2.3664 mutated: IN8A
9 K A -2.8649
10 L A -1.2711
11 L A -0.4744
12 K A -2.0646
13 N A -1.4791 mutated: IN13A
14 W A 0.3042 mutated: YW14A
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Laboratory of Theory of Biopolymers 2018