Chain sequence(s) |
A: KIYIKIYIKLLKIY
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
Dynamic mode | No |
Automated mutations | No |
Mutated residues | YW14A,IN13A,YW3A,IN2A,IN4A,YW7A,IN6A,IN8A |
Energy difference between WT (input) and mutated protein (by FoldX) | 0.947238 kcal/mol |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] FoldX: Starting FoldX energy minimalization (00:00:00) [INFO] FoldX: Building mutant model (00:00:10) [INFO] FoldX: Starting FoldX energy minimalization (00:02:03) [INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:13) [INFO] Main: Simulation completed successfully. (00:02:14) |
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan3D score | mutation |
---|---|---|---|---|
residue index | residue name | chain | Aggrescan3D score | |
1 | K | A | -2.9355 | |
2 | N | A | -2.7266 | mutated: IN2A |
3 | W | A | -1.6792 | mutated: YW3A |
4 | N | A | -3.0397 | mutated: IN4A |
5 | K | A | -3.6898 | |
6 | N | A | -2.9431 | mutated: IN6A |
7 | W | A | -1.7858 | mutated: YW7A |
8 | N | A | -2.3664 | mutated: IN8A |
9 | K | A | -2.8649 | |
10 | L | A | -1.2711 | |
11 | L | A | -0.4744 | |
12 | K | A | -2.0646 | |
13 | N | A | -1.4791 | mutated: IN13A |
14 | W | A | 0.3042 | mutated: YW14A |