Project name: GPGP

Status: done

Started: 2025-12-30 20:42:44
Settings
Chain sequence(s) A: HAEGTFTSDVSSYLEGQAAKEFIAWLVKGR
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:08)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:08)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:08)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:08)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:08)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:31)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:32)
Show buried residues

Minimal score value
-1.7758
Maximal score value
1.9363
Average score
-0.2325
Total score value
-6.9753

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 H A -1.3159
2 A A -0.8596
3 E A -1.7758
4 G A -1.0436
5 T A -0.5350
6 F A 0.4850
7 T A -0.1246
8 S A -0.4193
9 D A -0.9286
10 V A 0.5201
11 S A -0.0025
12 S A -0.2178
13 Y A 0.8107
14 L A 0.6289
15 E A -1.2886
16 G A -0.8937
17 Q A -0.9523
18 A A -0.7107
19 A A -0.6253
20 K A -1.4737
21 E A -0.8349
22 F A 1.2981
23 I A 1.9363
24 A A 0.8148
25 W A 0.8249
26 L A 1.2111
27 V A 1.5221
28 K A -0.6732
29 G A -1.1544
30 R A -1.1978
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018