Project name: 2510-17.pdb

Status: done

Started: 2026-03-12 01:05:30
Settings
Chain sequence(s) H: QVQLVQSGAEVKKPGSSVKVSCKASGYTFSSYWIHWVRQAPGQGLEWMGEMNPSNGGTNYNENFRRRATLIADESTSTAYMELSSLRSEDTAVYYCIVSYSGNYWSFDVWGQGTTVTVSS
L: EIVLTQSPATLSLSPGERATLSCRASSSVSYMHWYQQKPGSAPRLLIYATSNLASGIPARFSGSGSGTSFTLTISRLEPEDAAVYYCQQWSSNPPTFGQGTRLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:27)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:28)
Show buried residues

Minimal score value
-3.7931
Maximal score value
1.0548
Average score
-0.6011
Total score value
-135.8422

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.3687
2 V H -0.7319
3 Q H -1.0817
4 L H 0.0000
5 V H 0.0370
6 Q H 0.0000
7 S H -0.6306
8 G H -0.6362
9 A H -0.0210
11 E H 0.0085
12 V H 0.9834
13 K H -0.7805
14 K H -2.0851
15 P H -1.9059
16 G H -1.4731
17 S H -1.2523
18 S H -1.3899
19 V H 0.0000
20 K H -1.8508
21 V H 0.0000
22 S H -0.5007
23 C H 0.0000
24 K H -0.8020
25 A H 0.0000
26 S H -0.7194
27 G H -0.8976
28 Y H -0.3337
29 T H -0.0792
30 F H 0.0000
35 S H -0.6816
36 S H 0.0161
37 Y H 0.4293
38 W H 0.4753
39 I H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H -0.4747
44 Q H -0.6992
45 A H -1.0286
46 P H -1.0326
47 G H -1.2073
48 Q H -1.8516
49 G H -1.2733
50 L H 0.0000
51 E H -0.8346
52 W H 0.0000
53 M H 0.0000
54 G H 0.0000
55 E H 0.0000
56 M H 0.0000
57 N H -0.7211
58 P H 0.0000
59 S H -1.3531
62 N H -1.8966
63 G H -1.3445
64 G H -0.9748
65 T H -0.7748
66 N H -1.3640
67 Y H -2.0409
68 N H -2.5870
69 E H -3.4821
70 N H -3.1727
71 F H 0.0000
72 R H -3.7931
74 R H -3.4928
75 R H -2.1303
76 A H 0.0000
77 T H -1.0437
78 L H 0.0000
79 I H 0.2630
80 A H -0.4801
81 D H -1.0654
82 E H -1.8734
83 S H -1.0493
84 T H -0.8793
85 S H -1.0283
86 T H 0.0000
87 A H 0.0000
88 Y H -0.2610
89 M H 0.0000
90 E H -1.3951
91 L H 0.0000
92 S H -1.2602
93 S H -1.1271
94 L H 0.0000
95 R H -2.3340
96 S H -1.9829
97 E H -2.2885
98 D H 0.0000
99 T H -0.7450
100 A H 0.0000
101 V H 0.1051
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 I H 0.0000
106 V H 0.0000
107 S H 0.0000
108 Y H 1.0548
109 S H 0.1970
110 G H -0.4971
111 N H -1.0258
112 Y H 0.3209
113 W H 0.7610
114 S H 0.0000
115 F H 0.0000
116 D H -0.1788
117 V H -0.1355
118 W H -0.3012
119 G H 0.0000
120 Q H -1.1417
121 G H -0.5422
122 T H 0.0000
123 T H -0.0110
124 V H 0.0000
125 T H -0.1933
126 V H 0.0000
127 S H -0.8135
128 S H -0.8931
1 E L -1.7071
2 I L 0.0000
3 V L 0.8823
4 L L 0.0000
5 T L -0.3991
6 Q L 0.0000
7 S L -0.5016
8 P L -0.4091
9 A L -0.5873
10 T L -0.7639
11 L L -0.5072
12 S L -0.8204
13 L L -1.0081
14 S L -1.5827
15 P L -1.7658
16 G L -1.8764
17 E L -2.8128
18 R L -3.0742
19 A L 0.0000
20 T L -0.6793
21 L L 0.0000
22 S L -0.4953
23 C L 0.0000
24 R L -1.2666
25 A L 0.0000
26 S L -0.3111
27 S L -0.5058
28 S L -0.6282
29 V L 0.0000
37 S L -0.2009
38 Y L 0.3375
39 M L 0.0000
40 H L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -0.7411
45 K L -1.2448
46 P L -0.7183
47 G L -0.9392
48 S L -0.9587
49 A L -0.6992
50 P L 0.0000
51 R L -0.8268
52 L L -0.2076
53 L L 0.0000
54 I L 0.0000
55 Y L 0.8354
56 A L 0.3007
57 T L -0.0305
65 S L -0.2756
66 N L -0.3749
67 L L 0.1644
68 A L -0.1258
69 S L -0.4722
70 G L -0.4810
71 I L 0.0000
72 P L -0.2237
74 A L -0.2816
75 R L -0.9792
76 F L 0.0000
77 S L -0.3783
78 G L 0.0000
79 S L -0.4838
80 G L -0.6720
83 S L -0.6459
84 G L -0.6694
85 T L -0.8142
86 S L -0.9103
87 F L 0.0000
88 T L -0.4600
89 L L 0.0000
90 T L -0.7867
91 I L 0.0000
92 S L -1.9355
93 R L -2.8965
94 L L 0.0000
95 E L -1.8485
96 P L -1.6250
97 E L -1.9336
98 D L 0.0000
99 A L -1.2261
100 A L 0.0000
101 V L -0.6827
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 W L 0.0000
108 S L -0.2747
109 S L -1.1902
114 N L -1.8384
115 P L -1.7471
116 P L 0.0000
117 T L -0.3808
118 F L 0.0000
119 G L 0.0000
120 Q L -1.2096
121 G L 0.0000
122 T L 0.0000
123 R L -1.9044
124 L L 0.0000
125 E L -1.0953
126 I L -0.9451
127 K L -1.6786
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Laboratory of Theory of Biopolymers 2018