Project name: query_structure

Status: done

Started: 2026-03-17 00:58:39
Settings
Chain sequence(s) A: RCLPSGKACAGVTQKIPCCGSCVRGKCS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:18)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:19)
Show buried residues

Minimal score value
-2.0847
Maximal score value
1.1672
Average score
-0.6941
Total score value
-19.434

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 R A -1.6985
2 C A -0.5064
3 L A -0.5956
4 P A -0.7850
5 S A -0.9589
6 G A -1.4040
7 K A -1.7626
8 A A -1.3029
9 C A 0.0000
10 A A -0.3234
11 G A 0.1899
12 V A 1.1672
13 T A -0.0550
14 Q A -1.1332
15 K A -2.0061
16 I A -0.7444
17 P A -0.2170
18 C A 0.0000
19 C A 0.3258
20 G A -0.1179
21 S A -0.3140
22 C A -0.2673
23 V A -0.5374
24 R A -1.9416
25 G A -1.3847
26 K A -2.0847
27 C A 0.0000
28 S A -0.9763
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018