Project name: JFL1

Status: done

Started: 2026-07-29 03:44:45
Settings
Chain sequence(s) A: KKFVVVVVNEADAEANIAINKALYAELGYEVEVFVTSLEDLLEKMKEAADLAAEKLPEYDEVGLAISTTDHVISEEDANEITEYLASKFKEVVA
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:53)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:53)
Show buried residues

Minimal score value
-3.6661
Maximal score value
1.7643
Average score
-1.1086
Total score value
-104.2128

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -3.4609
2 K A -3.0505
3 F A 0.0000
4 V A 0.0000
5 V A 0.0000
6 V A 0.0000
7 V A 0.0000
8 V A 0.0000
9 N A 0.0000
10 E A -2.2660
11 A A -2.2682
12 D A -3.0214
13 A A 0.0000
14 E A -2.1997
15 A A -0.8615
16 N A -0.7181
17 I A 0.0612
18 A A 0.4845
19 I A 1.7643
20 N A 0.7160
21 K A -0.2244
22 A A 0.4915
23 L A 0.7228
24 Y A -0.2271
25 A A -0.6749
26 E A -1.2668
27 L A -0.3050
28 G A -1.2271
29 Y A -1.7863
30 E A -2.3629
31 V A -1.3574
32 E A -1.0882
33 V A 0.1778
34 F A 0.0687
35 V A 0.0703
36 T A 0.0000
37 S A -1.1304
38 L A -0.9835
39 E A -2.3991
40 D A -2.6247
41 L A 0.0000
42 L A -1.9316
43 E A -3.1638
44 K A -2.5981
45 M A 0.0000
46 K A -2.2153
47 E A -2.7402
48 A A 0.0000
49 A A 0.0000
50 D A -1.8151
51 L A -1.4183
52 A A 0.0000
53 A A 0.0000
54 E A -2.2553
55 K A -2.2497
56 L A -1.4751
57 P A -1.4875
58 E A -3.0912
59 Y A -3.2193
60 D A -3.3843
61 E A -2.7585
62 V A -1.7172
63 G A -0.2138
64 L A 0.4052
65 A A 0.3577
66 I A 0.6193
67 S A 0.1781
68 T A -0.4062
69 T A -1.3259
70 D A -1.7199
71 H A -0.1698
72 V A 1.1973
73 I A 0.4064
74 S A -1.3116
75 E A -3.0731
76 E A -3.6661
77 D A -2.6210
78 A A -2.3477
79 N A -3.5480
80 E A -3.2742
81 I A 0.0000
82 T A -1.8867
83 E A -2.4623
84 Y A -1.4483
85 L A -1.2026
86 A A -1.2342
87 S A -1.4038
88 K A -1.6908
89 F A -0.9593
90 K A -1.7197
91 E A -1.8504
92 V A -0.3525
93 V A 0.9764
94 A A 0.0022
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018