Project name: query_structure

Status: done

Started: 2026-03-16 21:41:14
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Chain sequence(s) A: MLPAPKNLVVSEVTEDSARLSSWDDPAAFYESFLIQYQESEKVGEAIVLTVVPGSERSYDLTGLKPGTEYTVSIYGVHNVYKDTNMRGLPLSAIFTTGG
C: MLPAPKNLVVSEVTEDSARLSWDDPAAFYESFLIQYQESEKVGEAIVLTVVPGSERSSYDLTGLKPGTEYTVSIIYGVHNVYKDTNMRGLPLSAIFTTGG
B: MLPAPKNLVVSEVTEDSARLSWDDPAAFYESFLIQYQESSEKVGEAIVLTVPGSERSYDLTGLKPGTEYTVVSIYGVHNVYKDTNMRGLPLSAIIFTTGGH
D: MLPAPKNLVVSEVTEDSARLSWDDPAAFYESFLIQYQESEKEAIVLTVPGSERSYDLTGLKPGTEYTVSIYGVHNVYKDDTNMRGLPLSAIIFTTGGH
input PDB
Selected Chain(s) A,C,B,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:59)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:02)
Show buried residues

Minimal score value
-3.2134
Maximal score value
2.2538
Average score
-0.6038
Total score value
-234.2915

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.1893
2 L A 0.7549
3 P A 0.2392
4 A A -0.1073
5 P A 0.0000
6 K A -1.9778
7 N A -1.3607
8 L A 0.0000
9 V A 0.0000
10 V A 0.0000
11 S A 0.0000
12 E A -1.9459
13 V A -0.8833
14 T A -1.5561
15 E A -2.5394
16 D A -2.3671
17 S A -1.5889
18 A A 0.0000
19 R A -1.0373
20 L A 0.0000
21 S A -0.5548
22 W A 0.0000
23 D A -1.1364
24 D A 0.0000
25 P A -0.3346
26 A A 0.2827
27 A A 0.0997
28 F A 0.3651
29 Y A 0.0000
30 E A -1.5930
31 S A -0.9417
32 F A 0.0000
33 L A 0.2709
34 I A 0.0000
35 Q A 0.4094
36 Y A 0.0000
37 Q A -0.9120
38 E A -1.8203
39 S A -1.5850
40 E A -2.6150
41 K A -2.0090
42 V A -0.0477
43 G A -0.6921
44 E A -1.7230
45 A A -0.3421
46 I A 0.8587
47 V A 1.5855
48 L A 0.0000
49 T A 0.2219
50 V A 0.0000
51 P A -0.7892
52 G A -0.7390
53 S A -0.8395
54 E A -0.5710
55 R A 0.0000
56 S A -0.3785
57 Y A 0.0000
58 D A -0.9675
59 L A 0.0000
60 T A -1.2297
61 G A -1.4775
62 L A 0.0000
63 K A -2.8927
64 P A -2.4631
65 G A -1.9320
66 T A 0.0000
67 E A -2.1794
68 Y A 0.0000
69 T A -0.0647
70 V A 0.0000
71 S A 0.3635
72 I A 0.0000
73 Y A 0.1047
74 G A 0.0000
75 V A -0.8062
76 H A -0.9069
77 N A -1.5939
78 V A 0.2206
79 Y A 0.0577
80 K A -2.0624
81 D A -2.5598
82 T A -1.4879
83 N A -1.9255
84 M A -0.8600
85 R A -1.1163
86 G A 0.0000
87 L A 0.9862
88 P A 0.0552
89 L A -0.1124
90 S A 0.1709
91 A A 0.8468
92 I A 1.5753
93 F A 0.0000
94 T A -1.0118
95 T A 0.0000
96 G A -1.6330
97 G A -1.5551
1 M B 1.1788
2 L B 0.7297
3 P B 0.2733
4 A B 0.1599
5 P B 0.0000
6 K B -1.3671
7 N B -0.8991
8 L B 0.0000
9 V B -0.0967
10 V B 0.0000
11 S B -1.2623
12 E B -2.0842
13 V B -1.7287
14 T B -2.0449
15 E B -3.1603
16 D B -3.0034
17 S B -2.2464
18 A B 0.0000
19 R B -1.5625
20 L B 0.0000
21 S B -0.6073
22 W B 0.0000
23 D B 0.0000
24 D B 0.0000
25 P B -0.1129
26 A B 0.1475
27 A B -0.0285
28 F B 0.1041
29 Y B 0.0000
30 E B -2.0193
31 S B -1.4337
32 F B 0.0000
33 L B 0.4658
34 I B 0.0000
35 Q B 0.6965
36 Y B 0.0000
37 Q B -0.8955
38 E B -1.8698
39 S B -1.5584
40 E B -2.4403
41 K B -1.9670
42 V B 0.1382
43 G B -0.8676
44 E B -1.6843
45 A B -0.1565
46 I B 1.2969
47 V B 2.2538
48 L B 1.3693
49 T B 0.4640
50 V B 0.0000
51 P B -1.0052
52 G B -1.2674
53 S B -1.1591
54 E B -1.3494
55 R B -0.9312
56 S B -0.7478
57 Y B -0.6089
58 D B -1.5745
59 L B 0.0000
60 T B -1.4617
61 G B -1.5263
62 L B 0.0000
63 K B -3.1182
64 P B -2.7976
65 G B -2.0109
66 T B 0.0000
67 E B -1.8976
68 Y B 0.0000
69 T B -0.5863
70 V B 0.0000
71 S B 0.1864
72 I B 0.0000
73 Y B 0.0000
74 G B 0.0000
75 V B -0.8971
76 H B -0.9010
77 N B -1.2193
78 V B 0.5833
79 Y B 0.2734
80 K B -1.9623
81 D B -2.4731
82 T B -1.2908
83 N B -1.9361
84 M B -0.5276
85 R B -1.1204
86 G B 0.0000
87 L B 1.2543
88 P B 0.2625
89 L B 0.0000
90 S B -0.3888
91 A B 0.0000
92 I B 0.1773
93 F B 0.0000
94 T B -1.2047
95 T B 0.0000
96 G B -2.2085
97 G B -2.1198
98 H B -1.8052
1 M C 1.1944
2 L C 0.7949
3 P C 0.3005
4 A C 0.0143
5 P C 0.0000
6 K C -1.3174
7 N C -0.9866
8 L C 0.0000
9 V C 0.0000
10 V C 0.0000
11 S C 0.0000
12 E C -1.8429
13 V C -0.7947
14 T C -1.5552
15 E C -2.6543
16 D C -2.3427
17 S C -1.5010
18 A C 0.0000
19 R C -0.7420
20 L C 0.0000
21 S C 0.0000
22 W C 0.0000
23 D C -0.8553
24 D C 0.0000
25 P C -0.2724
26 A C 0.2645
27 A C 0.0891
28 F C 0.3486
29 Y C 0.0000
30 E C -1.6510
31 S C -0.9541
32 F C 0.0000
33 L C 0.3772
34 I C 0.0000
35 Q C 0.6097
36 Y C 0.0000
37 Q C -0.7057
38 E C -1.6444
39 S C -1.4680
40 E C -2.2825
41 K C -1.6108
42 V C 0.0815
43 G C -0.6381
44 E C -1.4434
45 A C -0.2263
46 I C 0.9774
47 V C 1.8815
48 L C 1.0581
49 T C 0.3620
50 V C 0.0000
51 P C -0.7907
52 G C -0.7767
53 S C -0.8490
54 E C -0.5409
55 R C 0.0000
56 S C -0.2608
57 Y C -0.1595
58 D C -0.7517
59 L C 0.0000
60 T C 0.0000
61 G C -1.4884
62 L C 0.0000
63 K C -2.8776
64 P C -2.5012
65 G C -1.9137
66 T C 0.0000
67 E C -1.8300
68 Y C 0.0000
69 T C -0.1134
70 V C 0.0000
71 S C 0.3359
72 I C 0.0000
73 Y C 0.1066
74 G C 0.0000
75 V C -0.6896
76 H C -0.7936
77 N C -1.5168
78 V C 0.2727
79 Y C 0.0675
80 K C -2.0610
81 D C -2.5491
82 T C -1.4597
83 N C -1.8090
84 M C -0.6111
85 R C -0.8111
86 G C 0.0000
87 L C 0.8366
88 P C 0.0481
89 L C -0.0346
90 S C 0.1492
91 A C 0.6919
92 I C 1.2496
93 F C 0.0000
94 T C -0.9551
95 T C 0.0000
96 G C -1.6602
97 G C -1.6227
1 M D 1.2009
2 L D 0.8130
3 P D 0.3344
4 A D 0.2171
5 P D 0.0000
6 K D -1.2582
7 N D -0.9704
8 L D 0.0000
9 V D 0.0000
10 V D 0.0000
11 S D -1.3788
12 E D -2.2180
13 V D 0.0000
14 T D -2.1713
15 E D -3.1315
16 D D -3.2134
17 S D -2.3715
18 A D 0.0000
19 R D -1.5685
20 L D 0.0000
21 S D -0.6900
22 W D 0.0000
23 D D -0.8139
24 D D 0.0000
25 P D -0.1377
26 A D 0.1478
27 A D -0.0240
28 F D 0.2097
29 Y D 0.0000
30 E D -1.9752
31 S D -1.4205
32 F D 0.0000
33 L D 0.4578
34 I D 0.0000
35 Q D 0.6710
36 Y D 0.0000
37 Q D -1.2493
38 E D -2.1492
39 S D -1.8160
40 E D -2.9209
41 K D -3.1798
44 E D -2.0627
45 A D -0.4325
46 I D 1.2998
47 V D 2.2155
48 L D 1.3476
49 T D 0.4562
50 V D 0.0000
51 P D -1.0093
52 G D -1.2541
53 S D -1.1698
54 E D -1.4092
55 R D -1.0169
56 S D -0.7840
57 Y D -0.5770
58 D D -1.4732
59 L D 0.0000
60 T D -1.4705
61 G D -1.5831
62 L D 0.0000
63 K D -3.0650
64 P D -2.7217
65 G D -1.9780
66 T D -1.8908
67 E D -1.5008
68 Y D 0.0000
69 T D -0.5332
70 V D 0.0000
71 S D 0.1634
72 I D 0.0000
73 Y D 0.0000
74 G D 0.0000
75 V D -0.8432
76 H D -0.8195
77 N D -1.1099
78 V D 0.7706
79 Y D 0.3780
80 K D -1.9200
81 D D -2.4465
82 T D -1.2423
83 N D -1.8638
84 M D -0.4703
85 R D -1.1088
86 G D 0.0000
87 L D 1.3138
88 P D 0.3099
89 L D 0.0000
90 S D -0.3710
91 A D 0.0000
92 I D 0.1421
93 F D 0.0000
94 T D -0.9426
95 T D 0.0000
96 G D -2.0448
97 G D -2.0309
98 H D -1.7866
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Laboratory of Theory of Biopolymers 2018