Project name: 5395e5fc9e01ebb

Status: done

Started: 2025-06-03 05:12:15
Settings
Chain sequence(s) H: QVQLQESGPGLVKPSETLSLTCTVSGGSFSSHFWSWIRQPPGKGLEWIGYILYTGGTSFNPSLKSRVSMSVGTSKNQFSLKLSSVTAADTAVYYCARARSGITFTGIIVPGSFDIWGQGTMVTVSS
L: EIVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPWTFGQGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:42)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:45)
Show buried residues

Minimal score value
-3.301
Maximal score value
2.537
Average score
-0.487
Total score value
-113.9478

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.5337
2 V H -1.1729
3 Q H -1.7269
4 L H 0.0000
5 Q H -1.5941
6 E H 0.0000
7 S H -0.6628
8 G H -0.5061
9 P H -0.1260
11 G H 0.1623
12 L H 0.6936
13 V H 0.0000
14 K H -1.6224
15 P H -1.2040
16 S H -1.2134
17 E H -1.6051
18 T H -1.2920
19 L H 0.0000
20 S H -1.0046
21 L H 0.0000
22 T H -0.6370
23 C H 0.0000
24 T H -1.0510
25 V H 0.0000
26 S H -1.3273
27 G H -1.2305
28 G H -0.9902
29 S H -0.4949
30 F H 0.0000
35 S H -0.2229
36 S H -0.3293
37 H H -0.2615
38 F H 0.0000
39 W H 0.0000
40 S H 0.0000
41 W H 0.0000
42 I H 0.0000
43 R H 0.0000
44 Q H -0.7044
45 P H -0.8390
46 P H -0.9473
47 G H -1.4674
48 K H -2.3791
49 G H -1.6094
50 L H 0.0000
51 E H -0.8054
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 Y H 0.1465
56 I H 0.0000
57 L H 0.3146
58 Y H 0.3573
59 T H 0.0003
63 G H -0.1981
64 G H -0.2376
65 T H -0.0788
66 S H -0.2851
67 F H -0.5825
68 N H -0.8021
69 P H -1.0493
70 S H -0.9204
71 L H 0.0000
72 K H -2.0818
74 S H -1.3309
75 R H -1.4063
76 V H 0.0000
77 S H -1.1795
78 M H 0.0000
79 S H -0.3913
80 V H -0.1267
81 G H -0.7569
82 T H -0.8496
83 S H -1.1625
84 K H -2.0250
85 N H -1.2852
86 Q H -1.0325
87 F H 0.0000
88 S H -0.5914
89 L H 0.0000
90 K H -1.7737
91 L H 0.0000
92 S H -1.0788
93 S H -0.9437
94 V H 0.0000
95 T H -0.5175
96 A H -0.2115
97 A H 0.0564
98 D H 0.0000
99 T H 0.1950
100 A H 0.0000
101 V H 0.3123
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H -0.4262
107 A H 0.0000
108 R H -0.1913
109 S H 0.7299
110 G H 1.0890
111 I H 2.5370
111A T H 2.0527
111B F H 2.4560
111C T H 1.7131
112D G H 1.3092
112C I H 2.0075
112B I H 2.0077
112A V H 1.5073
112 P H 0.8171
113 G H 0.0000
114 S H 0.0000
115 F H 0.0000
116 D H -0.4468
117 I H -0.5041
118 W H -0.7179
119 G H 0.0000
120 Q H -1.7035
121 G H 0.0000
122 T H -0.2537
123 M H 0.4662
124 V H 0.0000
125 T H 0.2270
126 V H 0.0000
127 S H -0.4540
128 S H -0.6316
1 E L -1.6424
2 I L 0.0000
3 V L 0.6041
4 L L 0.0000
5 T L -0.8047
6 Q L 0.0000
7 S L -0.9579
8 P L -0.6013
9 G L -1.0312
10 T L -0.9108
11 L L -0.6464
12 S L -0.8173
13 L L -1.0612
14 S L -1.5834
15 P L -1.7075
16 G L -1.9046
17 E L -2.5565
18 R L -3.0364
19 A L 0.0000
20 T L -0.6293
21 L L 0.0000
22 S L -0.9186
23 C L 0.0000
24 R L -2.3665
25 A L 0.0000
26 S L -1.0497
27 Q L -1.7839
28 S L -1.4304
29 V L 0.0000
30 S L -0.6332
36 S L -0.3115
37 S L -0.4856
38 Y L 0.1381
39 L L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.0461
46 P L -0.7882
47 G L -1.3029
48 Q L -1.7826
49 A L -1.1199
50 P L 0.0000
51 R L -0.8784
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.0061
56 G L -0.2333
57 A L 0.0000
65 S L -0.5821
66 S L -0.5723
67 R L -1.2175
68 A L -0.6041
69 T L -0.4863
70 G L -0.7483
71 I L -0.8302
72 P L -1.1934
74 D L -2.3484
75 R L -1.9836
76 F L 0.0000
77 S L -0.9200
78 G L -0.5024
79 S L -0.6813
80 G L -1.0834
83 S L -1.0908
84 G L -1.2805
85 T L -1.8031
86 D L -2.1976
87 F L 0.0000
88 T L -0.7773
89 L L 0.0000
90 T L -0.8506
91 I L 0.0000
92 S L -2.4115
93 R L -3.3010
94 L L 0.0000
95 E L -1.6016
96 P L -1.1817
97 E L -1.3896
98 D L 0.0000
99 F L -0.3287
100 A L 0.0000
101 V L -0.5976
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 Y L 0.0000
108 G L -0.0335
109 S L -0.6594
114 S L -0.6317
115 P L 0.0000
116 W L 0.0000
117 T L -0.2122
118 F L 0.0000
119 G L 0.0000
120 Q L -1.5631
121 G L 0.0000
122 T L 0.0000
123 K L -1.4374
124 V L 0.0000
125 E L -1.0976
126 I L -1.1012
127 K L -1.7308
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Laboratory of Theory of Biopolymers 2018