Project name: query_structure

Status: done

Started: 2026-03-17 01:17:21
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Chain sequence(s) A: VSDVPRDLEVVAATPTSLLISWVPPWRPVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVNGIGPQLTIPDGISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:31)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:31)
Show buried residues

Minimal score value
-2.7058
Maximal score value
1.6716
Average score
-0.5489
Total score value
-51.5983

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.6716
2 S A 0.0138
3 D A -0.9099
4 V A -0.8295
5 P A 0.0000
6 R A -2.3617
7 D A -2.7058
8 L A 0.0000
9 E A -1.7789
10 V A 0.0738
11 V A 1.5235
12 A A 0.8782
13 A A 0.2878
14 T A -0.5354
15 P A -1.1326
16 T A -0.9996
17 S A -0.5408
18 L A 0.0000
19 L A 0.7112
20 I A 0.0000
21 S A -0.5839
22 W A 0.0000
23 V A -0.3868
24 P A -0.5385
25 P A 0.0614
26 W A 0.7924
27 R A -0.6628
28 P A -0.9777
29 V A -0.9801
30 R A -1.6976
31 Y A -0.9299
32 Y A 0.0000
33 R A -0.8801
34 I A 0.0000
35 T A 0.0000
36 Y A -0.3930
37 G A 0.0000
38 E A -1.5025
39 T A -1.1988
40 G A -1.2098
41 G A -1.3226
42 N A -1.5146
43 S A -0.8551
44 P A -0.3978
45 V A 0.2912
46 Q A -1.1911
47 E A -1.8539
48 F A -0.8058
49 T A -0.3176
50 V A 0.0000
51 P A -1.1072
52 G A -1.3681
53 S A -1.4085
54 K A -1.7284
55 S A -0.7039
56 T A -0.4032
57 A A 0.0000
58 T A 0.2294
59 I A 0.0000
60 S A -0.6613
61 G A -1.0310
62 L A 0.0000
63 K A -2.3580
64 P A -1.6619
65 G A -1.4383
66 V A -1.4088
67 D A -2.0603
68 Y A 0.0000
69 T A -0.7568
70 I A 0.0000
71 T A -0.5678
72 V A 0.0000
73 Y A -0.1097
74 A A 0.0000
75 V A -0.3197
76 N A -0.4703
77 G A -0.1964
78 I A 1.1997
79 G A 0.4698
80 P A 0.0915
81 Q A -0.1625
82 L A 1.2558
83 T A 0.8497
84 I A 1.5791
85 P A -0.0638
86 D A -1.3288
87 G A -0.8192
88 I A -0.8335
89 S A -0.6844
90 I A -0.7256
91 N A -1.7273
92 Y A -1.4498
93 R A -2.5184
94 T A -1.5111
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Laboratory of Theory of Biopolymers 2018