Project name: 53e442a058bd27d

Status: done

Started: 2026-06-15 21:42:14
Settings
Chain sequence(s) A: TATGDEWWAKCKQVDVLDSEMSYYDSDPGKHKNTVIFLHGNPTSSYLWRNVIPHVEPLARCLAPDLIGMGKSGKLPNHSYRFVDHYRYLSAWFDSVNLPEKVTIVCHDWGSGLGFHWCNEHRDRVKGIVHMESVVSPLKGWESFPETARDILPQALRSEAGEEMVLKKNFFIERLLPSSIMRKLSEEEMDAYREPFVEPGESRRPTLTWPREIPIKGDGPEDVIEIVKSYNKWLSTSKDIPKLFINADPGFFSNAIKKVTKNWPNQKTVTVKGLHFLQEDSPEEIGEAIADFLNELT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:32)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:34)
Show buried residues

Minimal score value
-3.6718
Maximal score value
0.2804
Average score
-1.0124
Total score value
-300.6828

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
11 T A -0.6265
12 A A -1.2438
13 T A -2.3035
14 G A -2.5524
15 D A -3.2689
16 E A -3.0921
17 W A 0.0000
18 W A 0.0000
19 A A -2.1243
20 K A -2.5895
21 C A 0.0000
22 K A -2.1434
23 Q A -2.4371
24 V A -1.7155
25 D A -2.5374
26 V A 0.0000
27 L A -0.6356
28 D A -1.8452
29 S A -1.7551
30 E A -2.5881
31 M A 0.0000
32 S A 0.0000
33 Y A 0.0000
34 Y A 0.0000
35 D A 0.0000
36 S A -0.8824
37 D A -1.3589
38 P A -1.3206
39 G A -1.8926
40 K A -2.9409
41 H A -3.2424
42 K A -2.8393
43 N A -1.7556
44 T A 0.0000
45 V A 0.0000
46 I A 0.0000
47 F A 0.0000
48 L A 0.0000
49 H A 0.0000
50 G A 0.0000
51 N A 0.0000
52 P A 0.0000
53 T A 0.0000
54 S A 0.0000
55 S A 0.0000
56 Y A 0.0000
57 L A 0.0000
58 W A 0.0000
59 R A 0.0000
60 N A -0.9334
61 V A 0.0000
62 I A 0.0000
63 P A -1.0674
64 H A -1.8024
65 V A 0.0000
66 E A -0.7074
67 P A -0.3240
68 L A -0.1780
69 A A 0.0000
70 R A 0.0000
71 C A 0.0000
72 L A 0.0000
73 A A 0.0000
74 P A 0.0000
75 D A 0.0000
76 L A 0.0000
77 I A 0.0000
78 G A 0.0000
79 M A 0.0000
80 G A 0.0000
81 K A -1.8463
82 S A 0.0000
83 G A 0.0000
84 K A -1.4769
85 L A 0.0000
86 P A -1.3001
87 N A -1.8077
88 H A -1.6427
89 S A -1.0324
90 Y A 0.0000
91 R A -0.6209
92 F A 0.0000
93 V A 0.1766
94 D A -0.6465
95 H A 0.0000
96 Y A -0.5651
97 R A -1.5086
98 Y A 0.0000
99 L A 0.0000
100 S A -1.0659
101 A A -1.0711
102 W A 0.0000
103 F A 0.0000
104 D A -2.0934
105 S A -1.5343
106 V A 0.0000
107 N A -2.3480
108 L A -2.2527
109 P A 0.0000
110 E A -3.1966
111 K A -3.0413
112 V A 0.0000
113 T A 0.0000
114 I A 0.0000
115 V A 0.0000
116 C A 0.0000
117 H A 0.0000
118 D A 0.0000
119 W A 0.0000
120 G A 0.0000
121 S A 0.0000
122 G A 0.0000
123 L A 0.0000
124 G A 0.0000
125 F A 0.0000
126 H A -0.7684
127 W A 0.0000
128 C A 0.0000
129 N A -2.0805
130 E A -2.8203
131 H A -2.8080
132 R A -3.4971
133 D A -3.6718
134 R A -3.1806
135 V A 0.0000
136 K A -1.6918
137 G A 0.0000
138 I A 0.0000
139 V A 0.0000
140 H A 0.0000
141 M A 0.0000
142 E A 0.0000
143 S A 0.0000
144 V A 0.2804
145 V A 0.0000
146 S A -0.5691
147 P A 0.0000
148 L A -1.3348
149 K A -2.5503
150 G A -2.0983
151 W A -2.0314
152 E A -2.7143
153 S A -1.6801
154 F A 0.0000
155 P A -1.6472
156 E A -2.5663
157 T A -1.4118
158 A A -1.5415
159 R A -2.7458
160 D A -2.7840
161 I A -1.2792
162 L A 0.0000
163 P A -1.3117
164 Q A -2.0442
165 A A -1.5053
166 L A 0.0000
167 R A -1.1548
168 S A -1.5711
169 E A -2.4134
170 A A -1.7542
171 G A 0.0000
172 E A -2.3309
173 E A -3.0760
174 M A -1.8536
175 V A 0.0000
176 L A 0.0000
177 K A -3.2518
178 K A -3.0291
179 N A 0.0000
180 F A -1.2616
181 F A -0.4832
182 I A 0.0000
183 E A -1.6752
184 R A -2.1190
185 L A -0.7296
186 L A 0.0000
187 P A -1.1026
188 S A -0.8918
189 S A -0.3614
190 I A 0.0000
191 M A -0.5564
192 R A -1.5094
193 K A -2.3002
194 L A 0.0000
195 S A -2.3623
196 E A -3.5346
197 E A -3.6105
198 E A 0.0000
199 M A 0.0000
200 D A -3.3683
201 A A 0.0000
202 Y A 0.0000
203 R A -2.0592
204 E A -2.1989
205 P A 0.0000
206 F A 0.0000
207 V A 0.1241
208 E A -1.3150
209 P A -1.5296
210 G A -1.6894
211 E A -1.7832
212 S A -0.8782
213 R A 0.0000
214 R A -0.8871
215 P A 0.0000
216 T A 0.0000
217 L A 0.0000
218 T A -0.4909
219 W A 0.0000
220 P A 0.0000
221 R A -0.5593
222 E A 0.0000
223 I A -0.1967
224 P A 0.0000
225 I A 0.0000
226 K A -2.7129
227 G A -2.3299
228 D A -2.7463
229 G A 0.0000
230 P A -2.1236
231 E A -3.2881
232 D A -2.3201
233 V A 0.0000
234 I A 0.0000
235 E A -2.9364
236 I A -1.3583
237 V A 0.0000
238 K A -1.9721
239 S A -1.6957
240 Y A 0.0000
241 N A 0.0000
242 K A -1.9507
243 W A -1.2856
244 L A 0.0000
245 S A -1.3582
246 T A -1.4884
247 S A 0.0000
248 K A -2.9490
249 D A -2.8403
250 I A -2.0115
251 P A -1.6271
252 K A 0.0000
253 L A 0.0000
254 F A 0.0000
255 I A 0.0000
256 N A -1.0357
257 A A 0.0000
258 D A -2.7006
259 P A -1.7512
260 G A -1.1150
261 F A -0.3485
262 F A -0.2193
263 S A 0.0000
264 N A -1.9202
265 A A -1.1554
266 I A 0.0000
267 K A -2.1856
268 K A -2.5930
269 V A -0.9912
270 T A 0.0000
271 K A -2.8429
272 N A -2.4845
273 W A 0.0000
274 P A -2.3105
275 N A -2.6907
276 Q A -2.1004
277 K A -1.5904
278 T A -0.7792
279 V A -0.1179
280 T A -0.9779
281 V A 0.0000
282 K A -2.6661
283 G A 0.0000
284 L A -0.4007
285 H A 0.0000
286 F A 0.0000
287 L A 0.0000
288 Q A 0.0000
289 E A 0.0000
290 D A -1.3912
291 S A -1.7533
292 P A -2.2026
293 E A -3.4164
294 E A -3.5904
295 I A 0.0000
296 G A 0.0000
297 E A -3.4996
298 A A -2.3545
299 I A 0.0000
300 A A -2.3586
301 D A -3.1426
302 F A 0.0000
303 L A 0.0000
304 N A -2.5904
305 E A -2.7487
306 L A -1.2945
307 T A -0.9735
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018