Project name: mu1F5_ABB

Status: done

Started: 2025-07-15 13:00:44
Settings
Chain sequence(s) H: DVQLQESGPGLVKPSQSLSLTCSVTGYSITSDYYWNWIRQFPGNKLEWMGYVTYDGSNNYNPSLKNRISITRDSSKNQFFLKLNSVISEDTATYYCARFGSSYWAMDYWGQGTSLTVSS
L: QIVLTQSPAIMSASLGEAITLTCSASSSVSYMHWYQQKSGTSPKLLIYSTSNLASGVPSRFSGSGSGTFYSLTISSVEAEDAADYYCHQWYSYPWTFGGGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:39)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:42)
Show buried residues

Minimal score value
-2.5395
Maximal score value
1.7019
Average score
-0.3676
Total score value
-82.7175

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 D H -1.9494
2 V H -1.1781
3 Q H -1.6798
4 L H 0.0000
5 Q H -1.1806
6 E H 0.0000
7 S H -0.6369
8 G H -0.6137
9 P H -0.2284
11 G H 0.0908
12 L H 0.7847
13 V H 0.0000
14 K H -1.6980
15 P H -0.9929
16 S H -1.0396
17 Q H -1.8191
18 S H -1.4156
19 L H 0.0000
20 S H -0.9343
21 L H 0.0000
22 T H -0.4368
23 C H 0.0000
24 S H -0.9417
25 V H 0.0000
26 T H -1.0817
27 G H -1.0171
28 Y H -0.2118
29 S H -0.2511
30 I H 0.0000
31 T H -0.4820
35 S H -0.4501
36 D H -0.7958
37 Y H -0.1525
38 Y H -0.1062
39 W H 0.0000
40 N H 0.0000
41 W H 0.0000
42 I H 0.0000
43 R H 0.0000
44 Q H 0.0000
45 F H -1.0140
46 P H -1.0702
47 G H -1.2790
48 N H -1.8042
49 K H -2.2079
50 L H 0.0000
51 E H -0.6465
52 W H 0.0000
53 M H 0.0000
54 G H 0.0000
55 Y H 0.0000
56 V H 0.0000
57 T H -0.7387
58 Y H -0.7349
59 D H -1.8630
63 G H -1.3828
64 S H -1.1469
65 N H -1.1815
66 N H -0.7436
67 Y H -0.7525
68 N H -0.7939
69 P H -1.0584
70 S H -1.0198
71 L H 0.0000
72 K H -2.5395
74 N H -2.3878
75 R H -1.8996
76 I H 0.0000
77 S H -1.1237
78 I H 0.0000
79 T H -0.6864
80 R H -1.0580
81 D H -1.6584
82 S H -1.4443
83 S H -1.5204
84 K H -2.3436
85 N H -1.5369
86 Q H -1.3242
87 F H 0.0000
88 F H -0.1847
89 L H 0.0000
90 K H -1.2238
91 L H 0.0000
92 N H -1.2718
93 S H -0.8069
94 V H 0.0000
95 I H 0.3710
96 S H -0.5726
97 E H -1.3284
98 D H 0.0000
99 T H -0.2144
100 A H 0.0000
101 T H -0.3479
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H -0.0995
107 F H 0.0000
108 G H 0.0000
109 S H 0.3148
110 S H 0.4157
112 Y H 1.2643
113 W H 1.0953
114 A H 0.0000
115 M H 0.0000
116 D H -0.3199
117 Y H -0.3021
118 W H -0.4710
119 G H 0.0000
120 Q H -1.4709
121 G H -0.8843
122 T H -0.6897
123 S H -0.1935
124 L H 0.0000
125 T H -0.0117
126 V H 0.0000
127 S H -0.4587
128 S H -0.5157
1 Q L -0.4020
2 I L 0.5274
3 V L 1.3897
4 L L 0.0000
5 T L 0.3450
6 Q L 0.0000
7 S L 0.0490
8 P L 0.4252
9 A L 0.7316
10 I L 1.7019
11 M L 0.8175
12 S L -0.2525
13 A L 0.0000
14 S L -0.8802
15 L L -0.4147
16 G L -1.0581
17 E L -1.9013
18 A L -0.8706
19 I L 0.0000
20 T L -0.2727
21 L L 0.0000
22 T L 0.2086
23 C L 0.0000
24 S L 0.7100
25 A L 0.0000
26 S L 0.3386
27 S L -0.0255
28 S L 0.0163
29 V L 0.0000
37 S L 0.2657
38 Y L 0.9503
39 M L 0.0000
40 H L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L -0.7330
44 Q L 0.0000
45 K L -1.5814
46 S L -0.9991
47 G L -0.9941
48 T L -1.0173
49 S L -0.8473
50 P L 0.0000
51 K L -0.9123
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.4130
56 S L 0.0000
57 T L 0.0000
65 S L -0.4186
66 N L -0.4484
67 L L -0.0763
68 A L 0.0000
69 S L -0.4589
70 G L -0.4648
71 V L -0.2538
72 P L -0.3767
74 S L -0.4778
75 R L -0.7975
76 F L 0.0000
77 S L -0.4531
78 G L -0.3693
79 S L -0.2371
80 G L 0.1861
83 S L 0.1925
84 G L 0.1530
85 T L 0.5360
86 F L 1.5980
87 Y L 0.0000
88 S L 0.1531
89 L L 0.0000
90 T L -0.2628
91 I L 0.0000
92 S L -0.9545
93 S L -1.0861
94 V L 0.0000
95 E L -1.5993
96 A L -1.2407
97 E L -2.0056
98 D L 0.0000
99 A L -1.0099
100 A L 0.0000
101 D L -0.7736
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 H L 0.0000
106 Q L 0.0000
107 W L 0.9814
108 Y L 1.2818
109 S L 0.4893
114 Y L 0.5853
115 P L 0.0856
116 W L 0.0000
117 T L 0.2758
118 F L 0.0000
119 G L 0.0000
120 G L -0.8791
121 G L -0.6284
122 T L 0.0000
123 K L -0.3052
124 L L 0.0000
125 E L -0.4479
126 I L -0.2863
127 K L -1.3667
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018