Project name: query_structure

Status: done

Started: 2026-03-17 01:07:37
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Chain sequence(s) A: VQLVESGGGLVQPGGSLRLSCAASGFTFSGYDMSWVRQAAGKGLEWVSAIHSGGGSTYYVDFLKGRFTISRDNAKNTLYLQMNSLKPEDTAVYFCATHLRLGDFGYWGQGTLVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:14)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:15)
Show buried residues

Minimal score value
-2.4952
Maximal score value
1.6528
Average score
-0.4324
Total score value
-50.5949

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.1410
2 Q A -0.1877
3 L A 0.0000
4 V A 0.4435
5 E A 0.0000
6 S A -0.1915
7 G A -0.6225
8 G A 0.1552
9 G A 0.7177
10 L A 1.4503
11 V A -0.0422
12 Q A -1.3207
13 P A -1.6130
14 G A -1.4424
15 G A -0.9762
16 S A -1.2695
17 L A -0.9108
18 R A -2.1011
19 L A 0.0000
20 S A -0.4316
21 C A 0.0000
22 A A -0.3190
23 A A 0.0000
24 S A -0.2035
25 G A 0.0055
26 F A 0.1936
27 T A -0.0473
28 F A 0.0000
29 S A -0.7577
30 G A -0.5363
31 Y A -0.5335
32 D A -1.0462
33 M A 0.0000
34 S A 0.0000
35 W A 0.0000
36 V A 0.0000
37 R A 0.0000
38 Q A -0.2683
39 A A -0.8040
40 A A -0.8112
41 G A -1.2994
42 K A -2.0059
43 G A -0.8925
44 L A 0.5216
45 E A 0.0823
46 W A 0.5689
47 V A 0.0000
48 S A 0.0000
49 A A 0.0000
50 I A 0.0000
51 H A -1.1783
52 S A -1.0923
53 G A -1.2331
54 G A -1.2586
55 G A -0.9710
56 S A -0.4991
57 T A 0.2186
58 Y A 0.8664
59 Y A 0.2350
60 V A -0.0137
61 D A -1.1073
62 F A 0.5145
63 L A 0.0000
64 K A -1.7232
65 G A -1.4871
66 R A -1.1103
67 F A 0.0000
68 T A -0.7355
69 I A 0.0000
70 S A -0.4707
71 R A -1.0837
72 D A -1.5273
73 N A -1.7300
74 A A -1.3852
75 K A -2.2445
76 N A -1.6981
77 T A -1.0055
78 L A 0.0000
79 Y A -0.5328
80 L A 0.0000
81 Q A -1.1923
82 M A 0.0000
83 N A -1.4635
84 S A -1.3120
85 L A 0.0000
86 K A -2.4952
87 P A -1.9351
88 E A -2.3587
89 D A 0.0000
90 T A -0.3799
91 A A 0.0000
92 V A 1.0344
93 Y A 0.0000
94 F A 0.5177
95 C A 0.0000
96 A A 0.0000
97 T A 0.0000
98 H A -0.6512
99 L A -0.5701
100 R A -1.3782
101 L A 0.0829
102 G A -0.9287
103 D A -1.4995
104 F A -0.3351
105 G A 0.0411
106 Y A 0.7970
107 W A 0.6510
108 G A 0.0042
109 Q A -0.7844
110 G A 0.0747
111 T A 0.6304
112 L A 1.6528
113 V A 0.0000
114 T A 0.4081
115 V A 0.0000
116 S A -0.6791
117 S A -0.9190
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Laboratory of Theory of Biopolymers 2018