| Chain sequence(s) |
A: KKGHKGH
C: KKGHKGH B: KKGHKGH E: KKGHKGH D: KKGHKGH G: KKGHKGH F: KKGHKGH I: KKGHKGH H: KKGHKGH K: KKGHKGH J: KKGHKGH M: KKGHKGH L: KKGHKGH O: KKGHKGH N: KKGHKGH Q: KKGHKGH P: KKGHKGH S: KKGHKGH R: KKGHKGH T: KKGHKGH input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:13:20)
[INFO] Main: Simulation completed successfully. (00:13:24)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | K | A | -4.4904 | |
| 2 | K | A | -4.3264 | |
| 3 | G | A | -2.6448 | |
| 4 | H | A | 0.0000 | |
| 5 | K | A | -1.8806 | |
| 6 | G | A | -1.7334 | |
| 7 | H | A | -2.1525 | |
| 1 | K | B | -4.5835 | |
| 2 | K | B | -4.6611 | |
| 3 | G | B | -2.9239 | |
| 4 | H | B | 0.0000 | |
| 5 | K | B | -1.9517 | |
| 6 | G | B | -1.8004 | |
| 7 | H | B | -2.1234 | |
| 1 | K | C | -5.0261 | |
| 2 | K | C | -4.9477 | |
| 3 | G | C | -3.0209 | |
| 4 | H | C | 0.0000 | |
| 5 | K | C | -1.9608 | |
| 6 | G | C | -1.8355 | |
| 7 | H | C | -2.2515 | |
| 1 | K | D | -4.6735 | |
| 2 | K | D | -5.0328 | |
| 3 | G | D | -3.1046 | |
| 4 | H | D | 0.0000 | |
| 5 | K | D | -1.8719 | |
| 6 | G | D | -1.9217 | |
| 7 | H | D | -2.2569 | |
| 1 | K | E | -3.9169 | |
| 2 | K | E | -4.1848 | |
| 3 | G | E | -2.6086 | |
| 4 | H | E | -2.5339 | |
| 5 | K | E | -2.1551 | |
| 6 | G | E | -1.7683 | |
| 7 | H | E | -1.8249 | |
| 1 | K | F | -3.9930 | |
| 2 | K | F | -4.3171 | |
| 3 | G | F | -2.8505 | |
| 4 | H | F | -3.0382 | |
| 5 | K | F | -2.9382 | |
| 6 | G | F | -2.0936 | |
| 7 | H | F | -1.9760 | |
| 1 | K | G | -4.4868 | |
| 2 | K | G | -4.7253 | |
| 3 | G | G | -3.0566 | |
| 4 | H | G | 0.0000 | |
| 5 | K | G | -2.1803 | |
| 6 | G | G | -1.9620 | |
| 7 | H | G | -2.2910 | |
| 1 | K | H | -4.3582 | |
| 2 | K | H | -4.5352 | |
| 3 | G | H | -2.7229 | |
| 4 | H | H | 0.0000 | |
| 5 | K | H | 0.0000 | |
| 6 | G | H | -1.5676 | |
| 7 | H | H | -2.1429 | |
| 1 | K | I | -4.3582 | |
| 2 | K | I | -4.5540 | |
| 3 | G | I | -2.7649 | |
| 4 | H | I | 0.0000 | |
| 5 | K | I | -1.6726 | |
| 6 | G | I | -1.6051 | |
| 7 | H | I | -2.1669 | |
| 1 | K | J | -4.3404 | |
| 2 | K | J | -4.7149 | |
| 3 | G | J | -2.8675 | |
| 4 | H | J | 0.0000 | |
| 5 | K | J | -1.8246 | |
| 6 | G | J | -1.6745 | |
| 7 | H | J | -2.1931 | |
| 1 | K | K | -4.1737 | |
| 2 | K | K | -4.5223 | |
| 3 | G | K | -2.8028 | |
| 4 | H | K | 0.0000 | |
| 5 | K | K | -1.7708 | |
| 6 | G | K | -1.6182 | |
| 7 | H | K | -2.1525 | |
| 1 | K | L | -4.2979 | |
| 2 | K | L | -4.4388 | |
| 3 | G | L | -2.7736 | |
| 4 | H | L | 0.0000 | |
| 5 | K | L | -1.7853 | |
| 6 | G | L | -1.6005 | |
| 7 | H | L | -2.1316 | |
| 1 | K | M | -4.4001 | |
| 2 | K | M | -4.5733 | |
| 3 | G | M | -2.9177 | |
| 4 | H | M | 0.0000 | |
| 5 | K | M | -1.7472 | |
| 6 | G | M | -1.6201 | |
| 7 | H | M | -2.0745 | |
| 1 | K | N | -4.6374 | |
| 2 | K | N | -4.8510 | |
| 3 | G | N | -3.2229 | |
| 4 | H | N | 0.0000 | |
| 5 | K | N | -1.9908 | |
| 6 | G | N | -1.8372 | |
| 7 | H | N | -2.1288 | |
| 1 | K | O | -4.9289 | |
| 2 | K | O | -5.1207 | |
| 3 | G | O | -3.6627 | |
| 4 | H | O | 0.0000 | |
| 5 | K | O | -2.5198 | |
| 6 | G | O | -2.1393 | |
| 7 | H | O | -2.3718 | |
| 1 | K | P | -4.2064 | |
| 2 | K | P | -4.3276 | |
| 3 | G | P | -3.2497 | |
| 4 | H | P | -3.4613 | |
| 5 | K | P | -3.1225 | |
| 6 | G | P | -2.0725 | |
| 7 | H | P | -2.1383 | |
| 1 | K | Q | -3.8941 | |
| 2 | K | Q | -3.7911 | |
| 3 | G | Q | -2.8344 | |
| 4 | H | Q | -2.6898 | |
| 5 | K | Q | -2.3477 | |
| 6 | G | Q | -1.7407 | |
| 7 | H | Q | -2.0516 | |
| 1 | K | R | -4.4664 | |
| 2 | K | R | -4.2967 | |
| 3 | G | R | -3.0705 | |
| 4 | H | R | 0.0000 | |
| 5 | K | R | -2.3988 | |
| 6 | G | R | -2.0864 | |
| 7 | H | R | -2.3219 | |
| 1 | K | S | -4.3684 | |
| 2 | K | S | -4.4411 | |
| 3 | G | S | -2.7475 | |
| 4 | H | S | 0.0000 | |
| 5 | K | S | -2.0992 | |
| 6 | G | S | -1.9345 | |
| 7 | H | S | -2.1217 | |
| 1 | K | T | -4.1978 | |
| 2 | K | T | -4.3365 | |
| 3 | G | T | -2.6888 | |
| 4 | H | T | 0.0000 | |
| 5 | K | T | -1.7333 | |
| 6 | G | T | -1.7196 | |
| 7 | H | T | -2.0244 |