Project name: 54bd26a6c4a537a

Status: done

Started: 2026-05-21 12:16:29
Settings
Chain sequence(s) A: KKGHKGH
C: KKGHKGH
B: KKGHKGH
E: KKGHKGH
D: KKGHKGH
G: KKGHKGH
F: KKGHKGH
I: KKGHKGH
H: KKGHKGH
K: KKGHKGH
J: KKGHKGH
M: KKGHKGH
L: KKGHKGH
O: KKGHKGH
N: KKGHKGH
Q: KKGHKGH
P: KKGHKGH
S: KKGHKGH
R: KKGHKGH
T: KKGHKGH
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:13:20)
[INFO]       Main:     Simulation completed successfully.                                          (00:13:24)
Show buried residues

Minimal score value
-5.1207
Maximal score value
0.0
Average score
-2.6281
Total score value
-367.934

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -4.4904
2 K A -4.3264
3 G A -2.6448
4 H A 0.0000
5 K A -1.8806
6 G A -1.7334
7 H A -2.1525
1 K B -4.5835
2 K B -4.6611
3 G B -2.9239
4 H B 0.0000
5 K B -1.9517
6 G B -1.8004
7 H B -2.1234
1 K C -5.0261
2 K C -4.9477
3 G C -3.0209
4 H C 0.0000
5 K C -1.9608
6 G C -1.8355
7 H C -2.2515
1 K D -4.6735
2 K D -5.0328
3 G D -3.1046
4 H D 0.0000
5 K D -1.8719
6 G D -1.9217
7 H D -2.2569
1 K E -3.9169
2 K E -4.1848
3 G E -2.6086
4 H E -2.5339
5 K E -2.1551
6 G E -1.7683
7 H E -1.8249
1 K F -3.9930
2 K F -4.3171
3 G F -2.8505
4 H F -3.0382
5 K F -2.9382
6 G F -2.0936
7 H F -1.9760
1 K G -4.4868
2 K G -4.7253
3 G G -3.0566
4 H G 0.0000
5 K G -2.1803
6 G G -1.9620
7 H G -2.2910
1 K H -4.3582
2 K H -4.5352
3 G H -2.7229
4 H H 0.0000
5 K H 0.0000
6 G H -1.5676
7 H H -2.1429
1 K I -4.3582
2 K I -4.5540
3 G I -2.7649
4 H I 0.0000
5 K I -1.6726
6 G I -1.6051
7 H I -2.1669
1 K J -4.3404
2 K J -4.7149
3 G J -2.8675
4 H J 0.0000
5 K J -1.8246
6 G J -1.6745
7 H J -2.1931
1 K K -4.1737
2 K K -4.5223
3 G K -2.8028
4 H K 0.0000
5 K K -1.7708
6 G K -1.6182
7 H K -2.1525
1 K L -4.2979
2 K L -4.4388
3 G L -2.7736
4 H L 0.0000
5 K L -1.7853
6 G L -1.6005
7 H L -2.1316
1 K M -4.4001
2 K M -4.5733
3 G M -2.9177
4 H M 0.0000
5 K M -1.7472
6 G M -1.6201
7 H M -2.0745
1 K N -4.6374
2 K N -4.8510
3 G N -3.2229
4 H N 0.0000
5 K N -1.9908
6 G N -1.8372
7 H N -2.1288
1 K O -4.9289
2 K O -5.1207
3 G O -3.6627
4 H O 0.0000
5 K O -2.5198
6 G O -2.1393
7 H O -2.3718
1 K P -4.2064
2 K P -4.3276
3 G P -3.2497
4 H P -3.4613
5 K P -3.1225
6 G P -2.0725
7 H P -2.1383
1 K Q -3.8941
2 K Q -3.7911
3 G Q -2.8344
4 H Q -2.6898
5 K Q -2.3477
6 G Q -1.7407
7 H Q -2.0516
1 K R -4.4664
2 K R -4.2967
3 G R -3.0705
4 H R 0.0000
5 K R -2.3988
6 G R -2.0864
7 H R -2.3219
1 K S -4.3684
2 K S -4.4411
3 G S -2.7475
4 H S 0.0000
5 K S -2.0992
6 G S -1.9345
7 H S -2.1217
1 K T -4.1978
2 K T -4.3365
3 G T -2.6888
4 H T 0.0000
5 K T -1.7333
6 G T -1.7196
7 H T -2.0244
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Laboratory of Theory of Biopolymers 2018