Project name: Example

Status: done

Started: 2025-08-11 22:57:48
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Chain sequence(s) A: EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:29)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:30)
Show buried residues

Minimal score value
-3.2771
Maximal score value
1.6769
Average score
-0.7749
Total score value
-161.9627

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
16 E A -1.5966
17 V A -0.2230
18 E A -1.3862
19 T A -0.5701
20 F A 0.1180
21 A A 0.1040
22 F A -0.3457
23 Q A -0.8067
24 A A -0.7518
25 E A -1.3215
26 I A 0.0000
27 A A -0.8681
28 Q A -1.2778
29 L A 0.0000
30 M A 0.0000
31 S A -0.5496
32 L A -0.0123
33 I A 0.0000
34 I A 0.3665
35 N A -0.2686
36 T A 0.6384
37 F A 1.6769
38 Y A 0.3608
39 S A -0.4291
40 N A -1.3437
41 K A -1.0814
42 E A -0.9650
43 I A 0.0000
44 F A 0.0000
45 L A 0.0000
46 R A -1.3054
47 E A 0.0000
48 L A 0.0000
49 I A 0.0000
50 S A -1.2243
51 N A -1.9816
52 A A 0.0000
53 S A -1.5703
54 D A -2.6686
55 A A -1.6579
56 L A 0.0000
57 D A -1.8306
58 K A -1.7713
59 I A 0.0000
60 R A -1.2187
61 Y A 0.1306
62 E A -1.0380
63 S A -0.6276
64 L A 0.9386
65 T A -0.0634
66 D A -0.9053
67 P A -1.0994
68 S A -1.3789
69 K A -1.9896
70 L A -2.3664
71 D A -2.4934
72 S A -1.8048
73 G A -2.1325
74 K A -3.2054
75 E A -2.7540
76 L A -1.6636
77 K A -1.1504
78 I A 0.0000
79 D A 0.0000
80 I A 0.0000
81 I A 0.7976
82 P A 0.0000
83 N A -1.7257
84 P A -2.1774
85 Q A -2.6529
86 E A -2.8461
87 R A -2.2875
88 T A 0.0000
89 L A 0.0000
90 T A 0.2050
91 L A 0.0000
92 V A 0.1657
93 D A 0.0000
94 T A -0.7415
95 G A 0.0000
96 I A -0.7343
97 G A 0.0000
98 M A -0.5664
99 T A -1.3362
100 K A -1.6678
101 A A -0.9188
102 D A -0.5854
103 L A -0.4394
104 I A -0.6037
105 N A -1.2221
106 N A -0.7791
107 L A 0.3974
108 G A -0.0540
109 T A 0.1150
110 I A 1.3865
111 A A 0.1782
112 K A -0.7301
113 S A -0.5826
114 G A -0.5652
115 T A 0.0000
116 K A -1.8078
117 A A -1.4011
118 F A 0.0000
119 M A -1.5993
120 E A -2.3909
121 A A -1.4598
122 L A -1.2899
123 Q A -1.9301
124 A A -1.2021
125 G A -1.2520
126 A A -1.0686
127 D A -1.1990
128 I A 0.0000
129 S A -0.7714
130 M A -0.3288
131 I A 0.0000
132 G A -1.0249
133 Q A -1.2646
134 F A -0.8121
135 G A -0.6055
136 V A 0.0000
137 G A -0.4929
138 F A -0.0154
139 Y A 0.3046
140 S A 0.0000
141 A A 0.0000
142 Y A 0.0000
143 L A 0.0000
144 V A 0.0000
145 A A 0.0000
146 E A -2.3747
147 K A -1.6041
148 V A 0.0000
149 V A -0.0568
150 V A 0.0000
151 I A 0.0269
152 T A 0.0000
153 K A -1.3416
154 H A -1.6713
155 N A -2.2099
156 D A -2.7069
157 D A -2.5838
158 E A -2.7253
159 Q A 0.0000
160 Y A 0.0000
161 A A 0.0000
162 W A 0.0000
163 E A -0.2990
164 S A 0.0000
165 S A -1.1669
166 A A -0.7823
167 G A -0.7010
168 G A -0.5538
169 S A -0.2463
170 F A 0.0000
171 T A -0.4429
172 V A 0.0000
173 R A -1.3783
174 A A -1.3990
175 D A -1.7312
176 H A -2.0101
177 G A -1.7847
178 E A -2.3110
179 P A -1.5095
180 I A -0.4390
181 G A -0.7680
182 R A 0.0000
183 G A 0.0000
184 T A 0.0000
185 K A -0.1617
186 V A 0.0000
187 I A 0.1239
188 L A 0.0000
189 H A -1.5609
190 L A 0.0000
191 K A -2.5327
192 E A -3.2771
193 D A -2.9452
194 Q A 0.0000
195 T A -1.8974
196 E A -2.0944
197 Y A 0.0000
198 L A 0.0000
199 E A -1.7648
200 E A -1.6793
201 R A -2.8956
202 R A -2.4797
203 V A 0.0000
204 K A -2.9721
205 E A -3.1634
206 V A 0.0000
207 V A 0.0000
208 K A -3.0286
209 K A -3.0173
210 H A -1.8692
211 S A 0.0000
212 Q A -1.3527
213 F A 1.0471
214 I A 0.8284
215 G A 0.0615
216 Y A -0.1102
217 P A -0.1632
218 I A 0.1308
219 T A 0.4412
220 L A 0.4741
221 Y A 1.1294
222 L A 0.8697
223 E A -0.8153
224 K A -1.5703
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Laboratory of Theory of Biopolymers 2018