Project name: 54c3b7f948e7547

Status: done

Started: 2024-12-30 07:01:21
Settings
Chain sequence(s) J: MDVTIQHPWFKRTLGPFYPSRLFDQFFGEGLFEYDLLPFLSSTISPYYRQSLFRTVLDSGISEVRSDRDKFVIFLDVKHFSPEDLTVKVQDDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTFCGPKIQTGLDATHAERAIPVSREEKPTSAPSS
input PDB
Selected Chain(s) J
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with J chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:28)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:29)
Show buried residues

Minimal score value
-3.8579
Maximal score value
1.822
Average score
-0.7528
Total score value
-130.2401

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M J -0.7622
2 D J -1.4868
3 V J -0.4757
4 T J 0.0066
5 I J 1.2094
6 Q J -0.4177
7 H J -0.8830
8 P J 0.0000
9 W J 0.5456
10 F J 1.7824
11 K J 0.0000
12 R J 0.0000
13 T J 0.0000
14 L J 0.9891
15 G J 0.7183
16 P J 1.0395
17 F J 1.8220
18 Y J 0.8021
19 P J 0.0000
20 S J -0.3476
21 R J -1.0127
22 L J -0.2210
23 F J 0.0444
24 D J -0.7029
25 Q J -1.3546
26 F J -0.4068
27 F J -0.2334
28 G J -1.2336
29 E J -1.9514
30 G J -0.6574
31 L J 0.7631
32 F J 0.5632
33 E J -1.0887
34 Y J 0.1375
35 D J 0.0628
36 L J 1.7298
37 L J 1.3109
38 P J 0.4831
39 F J 0.6377
40 L J 1.6918
41 S J 1.1291
42 S J 0.7151
43 T J 0.6562
44 I J 1.0667
45 S J 0.8049
46 P J 0.5980
47 Y J 0.8008
48 Y J 0.5025
49 R J -1.1952
50 Q J -0.6516
51 S J -0.4131
52 L J 0.6623
53 F J 0.0000
54 R J -1.7998
55 T J -0.6359
56 V J -0.1029
57 L J 0.0000
58 D J -2.4952
59 S J -1.4606
60 G J -1.2094
61 I J -0.2088
62 S J 0.0000
63 E J -1.2384
64 V J 0.0000
65 R J -1.0099
66 S J 0.0000
67 D J -2.7607
68 R J -3.4524
69 D J -2.9621
70 K J -2.9417
71 F J 0.0000
72 V J 0.0000
73 I J 0.0000
74 F J -0.1636
75 L J 0.0000
76 D J -2.3047
77 V J -1.8470
78 K J -2.8972
79 H J -2.6391
80 F J 0.0000
81 S J -1.8019
82 P J -1.7376
83 E J -2.1871
84 D J -2.2206
85 L J 0.0000
86 T J -0.7879
87 V J 0.0000
88 K J -1.9656
89 V J 0.0000
90 Q J -1.8682
91 D J -1.0510
92 D J 0.0000
93 F J -1.0161
94 V J 0.0000
95 E J 0.0000
96 I J 0.0000
97 H J -1.6695
98 G J -2.2285
99 K J -3.3376
100 H J -2.7121
101 N J -2.4054
102 E J -2.1788
103 R J -3.2357
104 Q J -3.5791
105 D J -3.8579
106 D J -3.5954
107 H J -2.8437
108 G J -1.9850
109 Y J -0.3314
110 I J -0.7457
111 S J -1.9558
112 R J -3.6496
113 E J -3.5897
114 F J -1.8707
115 H J -1.9358
116 R J -1.3144
117 R J -2.1336
118 Y J -0.7093
119 R J 0.0000
120 L J 0.0000
121 P J 0.0000
122 S J 0.0412
123 N J -0.5505
124 V J 0.0000
125 D J -0.9613
126 Q J 0.0000
127 S J -1.5285
128 A J -0.7128
129 L J 0.0000
130 S J -0.3936
131 C J 0.0000
132 S J 0.0000
133 L J 0.0000
134 S J 0.0000
135 A J -1.3700
136 D J -2.2492
137 G J 0.0000
138 M J -1.2457
139 L J 0.0000
140 T J 0.0000
141 F J 0.0000
142 C J -0.6758
143 G J -0.4719
144 P J -0.4840
145 K J -0.3677
146 I J 0.9867
147 Q J -1.1895
148 T J -1.7021
149 G J -0.7088
150 L J 0.2321
151 D J -0.8905
152 A J -0.1855
153 T J -0.1315
154 H J 0.0000
155 A J -1.3525
156 E J -3.0662
157 R J -3.0053
158 A J -1.6340
159 I J 0.0000
160 P J -0.3555
161 V J 0.0660
162 S J -1.0344
163 R J -2.2394
164 E J -2.0517
165 E J -2.6279
166 K J -1.5625
167 P J -0.9651
168 T J -1.0165
169 S J -0.9147
170 A J -0.7990
171 P J -0.5631
172 S J -0.9585
173 S J -0.7503
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Laboratory of Theory of Biopolymers 2018