Project name: 4CMH

Status: done

Started: 2026-03-29 08:21:15
Settings
Chain sequence(s) H: QVQLVQSGAEVAKPGTSVKLSCKASGYTFTDYWMQWVKQRPGQGLEWIGTIYPGDGDTGYAQKFQGKATLTADKSSKTVYMHLSSLASEDSAVYYCARGDYYGSNSLDYWGQGTSVTVSS
L: DIVMTQSHLSMSTSLGDPVSITCKASQDVSTVVAWYQQKPGQSPRRLIYSASYRYIGVPDRFTGSGAGTDFTFTISSVQAEDLAVYYCQQHYSPPYTFGGGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:14)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:15)
Show buried residues

Minimal score value
-2.8298
Maximal score value
1.765
Average score
-0.481
Total score value
-109.1828

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.5367
2 V H -1.0260
3 Q H -1.2133
4 L H 0.0000
5 V H 0.7193
6 Q H 0.0000
7 S H -0.4049
8 G H -0.3309
9 A H 0.0352
11 E H 0.3035
12 V H 1.2444
13 A H -0.1334
14 K H -1.5445
15 P H -1.5379
16 G H -1.1367
17 T H -0.8937
18 S H -0.8716
19 V H -0.5692
20 K H -1.2869
21 L H 0.0000
22 S H -0.2924
23 C H 0.0000
24 K H -1.0077
25 A H 0.0000
26 S H -1.0418
27 G H -1.0954
28 Y H -0.6018
29 T H -0.3734
30 F H 0.0000
35 T H -1.0258
36 D H -0.3588
37 Y H 0.0000
38 W H 0.1187
39 M H 0.0000
40 Q H 0.0000
41 W H 0.0000
42 V H 0.0000
43 K H 0.0000
44 Q H -1.0262
45 R H -1.6165
46 P H -1.0994
47 G H -1.3697
48 Q H -1.9692
49 G H -1.3363
50 L H 0.0000
51 E H -1.4603
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 T H 0.0000
56 I H 0.0000
57 Y H -0.9357
58 P H 0.0000
59 G H -1.6890
62 D H -2.6468
63 G H -2.1370
64 D H -2.3667
65 T H -1.0561
66 G H -0.6948
67 Y H -0.8477
68 A H 0.0000
69 Q H -2.7167
70 K H -2.7592
71 F H 0.0000
72 Q H -2.2779
74 G H -1.5833
75 K H -1.3965
76 A H 0.0000
77 T H -0.6152
78 L H 0.0000
79 T H -0.5668
80 A H -1.1814
81 D H -1.4202
82 K H -1.9563
83 S H -1.1265
84 S H -1.2084
85 K H -1.6850
86 T H 0.0000
87 V H 0.0000
88 Y H -0.2976
89 M H 0.0000
90 H H -0.9090
91 L H 0.0000
92 S H -0.7218
93 S H -0.8016
94 L H 0.0000
95 A H -1.2333
96 S H -1.3897
97 E H -2.0017
98 D H 0.0000
99 S H -0.6426
100 A H 0.0000
101 V H -0.1542
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0517
107 G H 0.0000
108 D H 0.6145
109 Y H 1.5616
110 Y H 1.5887
111 G H 0.5809
112 S H 0.4380
113 N H 0.3653
114 S H 0.0000
115 L H 0.0000
116 D H 0.0000
117 Y H -0.0925
118 W H -0.1292
119 G H 0.0000
120 Q H -1.1677
121 G H -0.5908
122 T H 0.0000
123 S H -0.1768
124 V H 0.0000
125 T H 0.0135
126 V H 0.0000
127 S H -0.6164
128 S H -0.8957
1 D L -1.7641
2 I L 0.0000
3 V L 0.7654
4 M L 0.0000
5 T L -0.6213
6 Q L 0.0000
7 S L -0.6651
8 H L -0.6170
9 L L 0.5856
10 S L -0.3925
11 M L -0.4285
12 S L -0.6665
13 T L 0.0000
14 S L 0.0362
15 L L 0.6860
16 G L -0.2516
17 D L -0.6764
18 P L -0.6258
19 V L 0.0000
20 S L -0.2595
21 I L 0.0000
22 T L -0.9859
23 C L 0.0000
24 K L -2.2834
25 A L 0.0000
26 S L -1.2912
27 Q L -2.4769
28 D L -2.7241
29 V L 0.0000
36 S L -0.8175
37 T L -0.1726
38 V L 0.3221
39 V L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L -0.6810
44 Q L 0.0000
45 K L -1.3707
46 P L -0.9875
47 G L -1.3607
48 Q L -1.9302
49 S L -1.2786
50 P L 0.0000
51 R L -1.1376
52 R L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.4192
56 S L 0.3873
57 A L 0.0000
65 S L 0.2414
66 Y L 1.0933
67 R L -0.1436
68 Y L 0.7736
69 I L 1.7650
70 G L 0.1359
71 V L 0.0000
72 P L -1.0488
74 D L -2.2213
75 R L -1.3367
76 F L 0.0000
77 T L -0.5964
78 G L 0.0000
79 S L -0.4407
80 G L -1.0030
83 A L -1.0874
84 G L -1.7357
85 T L -2.3921
86 D L -2.8298
87 F L 0.0000
88 T L -0.7836
89 F L 0.0000
90 T L -0.2966
91 I L 0.0000
92 S L -0.9468
93 S L -0.7394
94 V L 0.0000
95 Q L -0.9353
96 A L -0.5708
97 E L -1.7864
98 D L 0.0000
99 L L -0.3985
100 A L 0.0000
101 V L -0.3718
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 H L 0.0000
108 Y L 0.6473
109 S L -0.0024
114 P L -0.5600
115 P L -0.8125
116 Y L 0.0000
117 T L -0.1227
118 F L 0.0000
119 G L 0.0000
120 G L -0.5808
121 G L 0.0000
122 T L 0.0000
123 K L -1.1188
124 L L 0.0000
125 E L -0.6113
126 I L 0.9550
127 K L -0.8438
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018