Project name: KLD-12_8

Status: done

Started: 2026-06-25 01:57:15
Settings
Chain sequence(s) A: KLDLKLDLKLDL
C: KLDLKLDLKLDL
B: KLDLKLDLKLDL
E: KLDLKLDLKLDL
D: KLDLKLDLKLDL
G: KLDLKLDLKLDL
F: KLDLKLDLKLDL
H: KLDLKLDLKLDL
input PDB
Selected Chain(s) A,C,B,E,D,G,F,H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:46)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:48)
Show buried residues

Minimal score value
-2.7693
Maximal score value
0.9832
Average score
-1.309
Total score value
-125.6612

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -1.6162
2 L A -0.8193
3 D A -2.2169
4 L A -1.0037
5 K A -2.1317
6 L A -1.0722
7 D A -2.4073
8 L A -1.1683
9 K A -1.9949
10 L A -0.5920
11 D A -1.2507
12 L A 0.6647
1 K B -1.0577
2 L B -0.6920
3 D B -1.8565
4 L B -1.3549
5 K B -2.2580
6 L B -1.1501
7 D B -1.7483
8 L B -1.0252
9 K B -1.9463
10 L B -1.0663
11 D B -1.0020
12 L B 0.7998
1 K C -1.1192
2 L C -1.0601
3 D C -1.5096
4 L C -0.9869
5 K C -1.3540
6 L C -1.1772
7 D C -1.6234
8 L C -1.3628
9 K C -1.4718
10 L C -0.8690
11 D C -0.5388
12 L C 0.9832
1 K D -0.9915
2 L D -0.8714
3 D D -1.6854
4 L D -1.2131
5 K D -1.9063
6 L D -1.0685
7 D D -1.2845
8 L D -1.1067
9 K D -2.0352
10 L D -1.4121
11 D D -0.8664
12 L D 0.8210
1 K E -2.0108
2 L E -1.5919
3 D E -2.1823
4 L E -1.3026
5 K E -1.9952
6 L E -1.2002
7 D E -1.6536
8 L E -1.3329
9 K E -1.9002
10 L E -0.9781
11 D E -0.9070
12 L E 0.9472
1 K F -0.9320
2 L F -0.9556
3 D F -1.6296
4 L F -1.3246
5 K F -2.0298
6 L F -1.4321
7 D F -1.8480
8 L F -1.7237
9 K F -2.7693
10 L F -2.0385
11 D F -1.5241
12 L F 0.3526
1 K G -2.3010
2 L G -1.5704
3 D G -2.6831
4 L G -1.6266
5 K G -2.5091
6 L G -1.2681
7 D G -2.0516
8 L G -1.2562
9 K G -2.0702
10 L G -0.8179
11 D G -1.0018
12 L G 0.8326
1 K H -1.7081
2 L H -0.8679
3 D H -2.2971
4 L H -0.9318
5 K H -2.2103
6 L H -0.9634
7 D H -2.4106
8 L H -1.3321
9 K H -2.4658
10 L H -1.0440
11 D H -1.7620
12 L H 0.2933
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Laboratory of Theory of Biopolymers 2018