Project name: Ab1-42_0ns

Status: done

Started: 2024-12-06 17:01:25
Settings
Chain sequence(s) A: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:18)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:18)
Show buried residues

Minimal score value
-3.1204
Maximal score value
3.7219
Average score
-0.0795
Total score value
-3.2602

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 D A -2.2755
2 A A -1.9570
3 E A -2.4735
4 F A -0.9341
5 R A -2.8661
6 H A -3.1204
7 D A -2.7946
8 S A -1.7438
9 G A -1.7197
10 Y A -1.2060
11 E A -2.2998
12 V A -0.6407
13 H A -0.7281
14 H A -1.2666
15 Q A -0.5288
16 K A 0.3054
17 L A 1.9861
18 V A 2.2114
19 F A 2.2805
20 F A 2.1358
21 A A 0.6114
22 E A -1.0443
23 D A -1.6643
24 V A -1.1436
25 G A -2.0515
26 S A -2.2009
27 N A -2.5146
28 K A -1.6882
29 G A -0.9349
30 A A -0.1316
31 I A 0.7154
32 I A 1.5864
33 G A 1.3728
34 L A 2.3077
35 M A 2.3943
36 V A 3.2652
37 G A 2.2270
38 G A 2.4547
39 V A 3.7219
40 V A 3.6996
41 I A 3.3928
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Laboratory of Theory of Biopolymers 2018