| Chain sequence(s) |
A: QVQLVQSGSELKKPGASSVKVSCKASGYTFTQNNMDWVRQAPGQGLEWMGDINTRSGGVVIIYYNEEFQDRLIMMTVDKSSTDTAYMMELSSLRSSEDTATYHCARRKSYGYYLDVWGEGTLVTVSSASTTKGPSVFPLAPCSRTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYTCNVDHKPSNNTKVDKRVES
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | TD30A |
| Energy difference between WT (input) and mutated protein (by FoldX) | -0.00535891 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] FoldX: Building mutant model (00:02:33)
[INFO] FoldX: Starting FoldX energy minimalization (00:02:43)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:04:08)
[INFO] Main: Simulation completed successfully. (00:04:09)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.4336 | |
| 2 | V | A | -0.5933 | |
| 3 | Q | A | -1.0181 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.6742 | |
| 6 | Q | A | -0.2013 | |
| 7 | S | A | -0.7369 | |
| 8 | G | A | -0.9165 | |
| 9 | S | A | -1.1905 | |
| 10 | E | A | -1.6127 | |
| 11 | L | A | -1.0078 | |
| 12 | K | A | -1.5782 | |
| 13 | K | A | -2.3811 | |
| 14 | P | A | -2.1475 | |
| 15 | G | A | -1.5259 | |
| 16 | A | A | -1.1836 | |
| 17 | S | A | -1.2653 | |
| 18 | V | A | 0.0000 | |
| 19 | K | A | -1.8117 | |
| 20 | V | A | 0.0000 | |
| 21 | S | A | -0.5216 | |
| 22 | C | A | 0.0000 | |
| 23 | K | A | -1.0762 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.8589 | |
| 26 | G | A | -0.9266 | |
| 27 | Y | A | -0.6141 | |
| 28 | T | A | -0.6378 | |
| 29 | F | A | 0.0000 | |
| 30 | D | A | -2.2698 | mutated: TD30A |
| 31 | Q | A | -1.4707 | |
| 32 | N | A | 0.0000 | |
| 33 | N | A | -0.8886 | |
| 34 | M | A | 0.0000 | |
| 35 | D | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | V | A | 0.0000 | |
| 38 | R | A | -0.3320 | |
| 39 | Q | A | -0.7337 | |
| 40 | A | A | -1.1206 | |
| 41 | P | A | -1.0509 | |
| 42 | G | A | -1.1974 | |
| 43 | Q | A | -1.6216 | |
| 44 | G | A | -0.7010 | |
| 45 | L | A | 0.5837 | |
| 46 | E | A | -0.1121 | |
| 47 | W | A | 0.3215 | |
| 48 | M | A | 0.0000 | |
| 49 | G | A | 0.0000 | |
| 50 | D | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | N | A | -1.0994 | |
| 53 | T | A | 0.0000 | |
| 54 | R | A | -2.7084 | |
| 55 | S | A | -1.5294 | |
| 56 | G | A | -1.2740 | |
| 57 | G | A | -0.3248 | |
| 58 | V | A | 1.0123 | |
| 59 | I | A | 1.5471 | |
| 60 | Y | A | 0.0108 | |
| 61 | N | A | -1.3051 | |
| 62 | E | A | -3.1252 | |
| 63 | E | A | -3.3463 | |
| 64 | F | A | 0.0000 | |
| 65 | Q | A | -2.4464 | |
| 66 | D | A | -2.7068 | |
| 67 | R | A | 0.0000 | |
| 68 | L | A | 0.0000 | |
| 69 | I | A | 0.8668 | |
| 70 | M | A | 0.0000 | |
| 71 | T | A | 0.0068 | |
| 72 | V | A | -1.2562 | |
| 73 | D | A | -2.0414 | |
| 74 | K | A | -2.8710 | |
| 75 | S | A | -1.4899 | |
| 76 | T | A | -1.4868 | |
| 77 | D | A | -2.1251 | |
| 78 | T | A | -1.2938 | |
| 79 | A | A | 0.0000 | |
| 80 | Y | A | -0.3043 | |
| 81 | M | A | 0.0000 | |
| 82 | E | A | -0.7153 | |
| 83 | L | A | 0.0000 | |
| 84 | S | A | -0.8742 | |
| 85 | S | A | -1.2252 | |
| 86 | L | A | 0.0000 | |
| 87 | R | A | -2.6101 | |
| 88 | S | A | -2.1862 | |
| 89 | E | A | -2.3981 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -1.0321 | |
| 92 | A | A | 0.0000 | |
| 93 | T | A | -0.3248 | |
| 94 | Y | A | 0.0000 | |
| 95 | H | A | -0.2871 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | R | A | -0.2152 | |
| 99 | R | A | 0.0053 | |
| 100 | K | A | -0.0051 | |
| 101 | S | A | 0.1328 | |
| 102 | Y | A | 1.3326 | |
| 103 | G | A | 1.1655 | |
| 104 | Y | A | 1.8543 | |
| 105 | Y | A | 1.7375 | |
| 106 | L | A | 0.6045 | |
| 107 | D | A | -0.3362 | |
| 108 | V | A | -0.1194 | |
| 109 | W | A | 0.0333 | |
| 110 | G | A | 0.0000 | |
| 111 | E | A | -1.5233 | |
| 112 | G | A | -0.8452 | |
| 113 | T | A | 0.0000 | |
| 114 | L | A | -0.4569 | |
| 115 | V | A | 0.0000 | |
| 116 | T | A | -0.9565 | |
| 117 | V | A | 0.0000 | |
| 118 | S | A | -1.3635 | |
| 119 | S | A | -0.9376 | |
| 120 | A | A | -0.5903 | |
| 121 | S | A | -0.6729 | |
| 122 | T | A | -0.8697 | |
| 123 | K | A | -1.3161 | |
| 124 | G | A | -1.5681 | |
| 125 | P | A | 0.0000 | |
| 126 | S | A | -0.3313 | |
| 127 | V | A | 0.0000 | |
| 128 | F | A | 0.7768 | |
| 129 | P | A | 0.2397 | |
| 130 | L | A | 0.9317 | |
| 131 | A | A | 0.2801 | |
| 132 | P | A | -0.2206 | |
| 133 | C | A | 0.1785 | |
| 134 | S | A | -0.7874 | |
| 135 | R | A | -2.0429 | |
| 137 | T | A | -1.2256 | |
| 138 | S | A | -1.4806 | |
| 139 | E | A | -2.3411 | |
| 140 | S | A | -1.3220 | |
| 141 | T | A | -0.9284 | |
| 142 | A | A | -0.7389 | |
| 143 | A | A | 0.1141 | |
| 144 | L | A | 0.0000 | |
| 145 | G | A | 0.0000 | |
| 146 | C | A | 0.0000 | |
| 147 | L | A | 0.6553 | |
| 148 | V | A | 0.0000 | |
| 149 | K | A | -0.3154 | |
| 150 | D | A | -0.5238 | |
| 151 | Y | A | 0.0000 | |
| 152 | F | A | -0.2423 | |
| 153 | P | A | 0.0000 | |
| 154 | E | A | -0.4343 | |
| 155 | P | A | -0.6993 | |
| 156 | V | A | -0.5753 | |
| 157 | T | A | -0.4995 | |
| 158 | V | A | -0.1325 | |
| 159 | S | A | -0.5400 | |
| 160 | W | A | 0.0000 | |
| 161 | N | A | -1.0609 | |
| 162 | S | A | -0.7571 | |
| 163 | G | A | -0.5371 | |
| 164 | A | A | -0.2403 | |
| 165 | L | A | -0.0755 | |
| 166 | T | A | -0.2809 | |
| 167 | S | A | -0.3268 | |
| 168 | G | A | -0.4030 | |
| 169 | V | A | 0.0042 | |
| 170 | H | A | -0.5116 | |
| 171 | T | A | 0.2039 | |
| 172 | F | A | 1.0784 | |
| 173 | P | A | 0.7793 | |
| 174 | A | A | 1.3274 | |
| 175 | V | A | 2.4575 | |
| 176 | L | A | 2.1013 | |
| 177 | Q | A | 0.6110 | |
| 178 | S | A | 0.0099 | |
| 179 | S | A | -0.2903 | |
| 180 | G | A | -0.0512 | |
| 181 | L | A | 0.2448 | |
| 182 | Y | A | 0.8103 | |
| 183 | S | A | 0.7215 | |
| 184 | L | A | 0.0000 | |
| 185 | S | A | 0.6677 | |
| 186 | S | A | 0.0000 | |
| 187 | V | A | 0.3851 | |
| 188 | V | A | 0.0000 | |
| 189 | T | A | -0.2258 | |
| 190 | V | A | 0.0000 | |
| 191 | P | A | -0.6513 | |
| 192 | S | A | -0.7606 | |
| 193 | S | A | -0.6523 | |
| 194 | S | A | -0.4059 | |
| 195 | L | A | -0.3363 | |
| 196 | G | A | -0.6973 | |
| 197 | T | A | -0.6270 | |
| 198 | Q | A | -0.8916 | |
| 199 | T | A | -0.9987 | |
| 200 | Y | A | 0.0000 | |
| 201 | T | A | -1.7822 | |
| 202 | C | A | 0.0000 | |
| 203 | N | A | -1.6864 | |
| 204 | V | A | 0.0000 | |
| 205 | D | A | -1.8062 | |
| 206 | H | A | 0.0000 | |
| 207 | K | A | -2.8962 | |
| 208 | P | A | -1.8436 | |
| 209 | S | A | -1.9248 | |
| 210 | N | A | -2.6858 | |
| 211 | T | A | -2.0881 | |
| 212 | K | A | -2.6550 | |
| 213 | V | A | -1.6028 | |
| 214 | D | A | -2.8249 | |
| 215 | K | A | -2.2156 | |
| 216 | R | A | -2.6121 | |
| 217 | V | A | -1.1383 | |
| 218 | E | A | -1.1997 | |
| 219 | S | A | -1.0258 |