| Chain sequence(s) |
H: QVQLQESGPGLVKPSETLSLTCTVPRGSIRSYYWSWIRQPPRKGLEWIGYVHDGGRVTYNPSLTSRVTMSVDTSKDQFSLKLRSVTAADTAVYYCARQRGVREDYIFRYYGMDVWGPGTTVIVSS
L: DIQLTQSPSFLSASVGDRVTITCRASQTISKYLNWYQQKLGKAPQLLIYEASTLQSGVPSRFSGGGSGTDFSLTINSLQPDDFAVYYCQQSDTTPYTFGQGTKLDVR input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:58)
[INFO] Main: Simulation completed successfully. (00:00:59)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.6927 | |
| 2 | V | H | -1.3210 | |
| 3 | Q | H | -1.5126 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -1.1788 | |
| 6 | E | H | 0.0000 | |
| 7 | S | H | -0.7212 | |
| 8 | G | H | -0.4736 | |
| 9 | P | H | 0.1095 | |
| 11 | G | H | 0.5848 | |
| 12 | L | H | 1.2549 | |
| 13 | V | H | 0.0000 | |
| 14 | K | H | -1.8405 | |
| 15 | P | H | -1.4216 | |
| 16 | S | H | -1.6439 | |
| 17 | E | H | -2.2922 | |
| 18 | T | H | -1.7612 | |
| 19 | L | H | 0.0000 | |
| 20 | S | H | -0.9512 | |
| 21 | L | H | 0.0000 | |
| 22 | T | H | -0.5849 | |
| 23 | C | H | 0.0000 | |
| 24 | T | H | -1.0408 | |
| 25 | V | H | 0.0000 | |
| 26 | P | H | -1.6683 | |
| 27 | R | H | -2.4703 | |
| 28 | G | H | -1.9174 | |
| 29 | S | H | -1.4677 | |
| 30 | I | H | 0.0000 | |
| 35 | R | H | -1.6743 | |
| 36 | S | H | -0.8565 | |
| 37 | Y | H | -0.1365 | |
| 38 | Y | H | 0.0000 | |
| 39 | W | H | 0.0000 | |
| 40 | S | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | I | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.9685 | |
| 45 | P | H | -1.1031 | |
| 46 | P | H | -1.6400 | |
| 47 | R | H | -2.8344 | |
| 48 | K | H | -2.9776 | |
| 49 | G | H | -1.7936 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.6781 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | Y | H | 0.0000 | |
| 56 | V | H | 0.0000 | |
| 57 | H | H | -1.2193 | |
| 58 | D | H | -1.6490 | |
| 59 | G | H | -1.5711 | |
| 63 | G | H | -1.5992 | |
| 64 | R | H | -2.0517 | |
| 65 | V | H | -0.4733 | |
| 66 | T | H | -0.0268 | |
| 67 | Y | H | 0.2415 | |
| 68 | N | H | 0.0000 | |
| 69 | P | H | -0.5434 | |
| 70 | S | H | -0.4358 | |
| 71 | L | H | 0.0000 | |
| 72 | T | H | -0.3434 | |
| 74 | S | H | -0.6077 | |
| 75 | R | H | -1.0604 | |
| 76 | V | H | 0.0000 | |
| 77 | T | H | -0.5964 | |
| 78 | M | H | 0.0000 | |
| 79 | S | H | -0.7254 | |
| 80 | V | H | -0.9949 | |
| 81 | D | H | -1.5854 | |
| 82 | T | H | -1.6119 | |
| 83 | S | H | -1.4881 | |
| 84 | K | H | -2.2578 | |
| 85 | D | H | -2.0342 | |
| 86 | Q | H | -1.5431 | |
| 87 | F | H | 0.0000 | |
| 88 | S | H | -0.5740 | |
| 89 | L | H | 0.0000 | |
| 90 | K | H | -1.4655 | |
| 91 | L | H | 0.0000 | |
| 92 | R | H | -1.8223 | |
| 93 | S | H | -1.4895 | |
| 94 | V | H | 0.0000 | |
| 95 | T | H | -0.5898 | |
| 96 | A | H | -0.0510 | |
| 97 | A | H | 0.1599 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | 0.5861 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.3388 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | -0.1900 | |
| 107 | Q | H | 0.0000 | |
| 108 | R | H | 0.0524 | |
| 109 | G | H | 0.4606 | |
| 110 | V | H | 0.7797 | |
| 111 | R | H | -0.7389 | |
| 111A | E | H | -1.7380 | |
| 111B | D | H | -1.2164 | |
| 111C | Y | H | 0.5404 | |
| 112C | I | H | 1.2071 | |
| 112B | F | H | 0.4795 | |
| 112A | R | H | -0.1873 | |
| 112 | Y | H | -0.0093 | |
| 113 | Y | H | 0.1468 | |
| 114 | G | H | 0.0000 | |
| 115 | M | H | 0.0000 | |
| 116 | D | H | -0.4108 | |
| 117 | V | H | -0.4038 | |
| 118 | W | H | 0.0000 | |
| 119 | G | H | 0.0000 | |
| 120 | P | H | -1.0250 | |
| 121 | G | H | -0.6634 | |
| 122 | T | H | -0.3153 | |
| 123 | T | H | 0.3258 | |
| 124 | V | H | 0.0000 | |
| 125 | I | H | 1.2974 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.2266 | |
| 128 | S | H | -0.5963 | |
| 1 | D | L | -2.2452 | |
| 2 | I | L | 0.0000 | |
| 3 | Q | L | -2.2459 | |
| 4 | L | L | 0.0000 | |
| 5 | T | L | -1.3949 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.3018 | |
| 8 | P | L | 0.3553 | |
| 9 | S | L | 0.5087 | |
| 10 | F | L | 1.7078 | |
| 11 | L | L | 0.7891 | |
| 12 | S | L | -0.0897 | |
| 13 | A | L | 0.0000 | |
| 14 | S | L | -0.5803 | |
| 15 | V | L | 0.2254 | |
| 16 | G | L | -0.6727 | |
| 17 | D | L | -1.4249 | |
| 18 | R | L | -2.2581 | |
| 19 | V | L | 0.0000 | |
| 20 | T | L | -0.5789 | |
| 21 | I | L | 0.0000 | |
| 22 | T | L | -0.8252 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.7240 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -1.8735 | |
| 27 | Q | L | -1.8482 | |
| 28 | T | L | -1.1904 | |
| 29 | I | L | 0.0000 | |
| 36 | S | L | -1.0568 | |
| 37 | K | L | -1.5890 | |
| 38 | Y | L | -0.8173 | |
| 39 | L | L | 0.0000 | |
| 40 | N | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | -0.6578 | |
| 45 | K | L | -0.6784 | |
| 46 | L | L | 0.6763 | |
| 47 | G | L | -0.6857 | |
| 48 | K | L | -1.8838 | |
| 49 | A | L | 0.0000 | |
| 50 | P | L | 0.0000 | |
| 51 | Q | L | -1.5202 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | -0.1630 | |
| 56 | E | L | -0.7598 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.4444 | |
| 66 | T | L | -0.0966 | |
| 67 | L | L | 0.1949 | |
| 68 | Q | L | -0.2301 | |
| 69 | S | L | -0.3597 | |
| 70 | G | L | -0.4726 | |
| 71 | V | L | -0.2488 | |
| 72 | P | L | -0.3010 | |
| 74 | S | L | -0.4299 | |
| 75 | R | L | -0.8333 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.3213 | |
| 78 | G | L | -0.3055 | |
| 79 | G | L | -0.8401 | |
| 80 | G | L | -1.2402 | |
| 83 | S | L | -1.3085 | |
| 84 | G | L | -1.2270 | |
| 85 | T | L | -1.7177 | |
| 86 | D | L | -2.1798 | |
| 87 | F | L | 0.0000 | |
| 88 | S | L | -0.7614 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | 0.0000 | |
| 91 | I | L | 0.0000 | |
| 92 | N | L | -1.6314 | |
| 93 | S | L | -1.2086 | |
| 94 | L | L | 0.0000 | |
| 95 | Q | L | -1.0233 | |
| 96 | P | L | -0.9261 | |
| 97 | D | L | -1.6521 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | 0.2337 | |
| 100 | A | L | 0.0000 | |
| 101 | V | L | 0.4139 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | S | L | 0.0000 | |
| 108 | D | L | -0.7332 | |
| 109 | T | L | -0.6110 | |
| 114 | T | L | -0.4048 | |
| 115 | P | L | 0.0000 | |
| 116 | Y | L | -0.4038 | |
| 117 | T | L | -0.7551 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | Q | L | -1.4448 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | 0.1663 | |
| 124 | L | L | 0.0000 | |
| 125 | D | L | -0.0303 | |
| 126 | V | L | -0.2798 | |
| 127 | R | L | -1.4169 |