Project name: V1K

Status: done

Started: 2026-07-20 05:48:04
Settings
Chain sequence(s) A: VFSKLAYILYGSGKQSSRVPLY
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:18)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:19)
Show buried residues

Minimal score value
-1.9966
Maximal score value
2.2163
Average score
0.4066
Total score value
8.9455

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 2.1156
2 F A 2.2163
3 S A -0.1718
4 K A -1.4815
5 L A 1.1197
6 A A 0.5065
7 Y A 1.5147
8 I A 1.6097
9 L A 1.9809
10 Y A 1.5833
11 G A 0.1428
12 S A -0.3063
13 G A -0.8035
14 K A -1.9966
15 Q A -1.5410
16 S A -0.4665
17 S A -0.5911
18 R A -1.5318
19 V A 1.3607
20 P A 0.3536
21 L A 1.7376
22 Y A 1.5942
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Laboratory of Theory of Biopolymers 2018