| Chain sequence(s) |
H: EVQLQQSGPELVKPGASVKISCKASGYTFTDYYMNWVRQSHGKSLEWIGDINPNNGGTKYNQKFKGKATATVDKSSSTAYMELRSLTSEDSAVYYCAKTGEWTVGIFDVWGTGTTVTVSS
L: QIVLTQSPAIMSASPGEKVTISCSASSSVSYMYWFQQKPGSSPKPWIYRTSNLASGVPGRFSGSGSGSSYSLTVSYMEAEDAATYYCQQYHSYPRTFGGGTKLEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:09)
[INFO] Main: Simulation completed successfully. (00:02:10)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | H | -1.9833 | |
| 2 | V | H | -1.0123 | |
| 3 | Q | H | -1.9091 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -1.9596 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -1.0860 | |
| 8 | G | H | -0.8254 | |
| 9 | P | H | -0.4904 | |
| 11 | E | H | -0.5055 | |
| 12 | L | H | 0.7338 | |
| 13 | V | H | -0.2957 | |
| 14 | K | H | -1.6314 | |
| 15 | P | H | -1.3774 | |
| 16 | G | H | -1.2127 | |
| 17 | A | H | -1.0041 | |
| 18 | S | H | -1.2689 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.9961 | |
| 21 | I | H | 0.0000 | |
| 22 | S | H | -0.8588 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.6479 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -1.2805 | |
| 27 | G | H | -1.1055 | |
| 28 | Y | H | -0.6419 | |
| 29 | T | H | -0.4991 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -1.5675 | |
| 36 | D | H | -1.9492 | |
| 37 | Y | H | -0.5475 | |
| 38 | Y | H | 0.1624 | |
| 39 | M | H | 0.0000 | |
| 40 | N | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.9617 | |
| 45 | S | H | -1.5367 | |
| 46 | H | H | -1.9207 | |
| 47 | G | H | -1.7972 | |
| 48 | K | H | -2.4424 | |
| 49 | S | H | -1.4154 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.9663 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | D | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | N | H | -1.1235 | |
| 58 | P | H | 0.0000 | |
| 59 | N | H | -2.3751 | |
| 62 | N | H | -2.1650 | |
| 63 | G | H | -1.5394 | |
| 64 | G | H | -1.2021 | |
| 65 | T | H | -0.8843 | |
| 66 | K | H | -1.4978 | |
| 67 | Y | H | -1.4085 | |
| 68 | N | H | -1.8445 | |
| 69 | Q | H | -2.7820 | |
| 70 | K | H | -2.9305 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -2.9828 | |
| 74 | G | H | -1.9209 | |
| 75 | K | H | -1.6355 | |
| 76 | A | H | 0.0000 | |
| 77 | T | H | -0.8026 | |
| 78 | A | H | -0.3567 | |
| 79 | T | H | -0.3767 | |
| 80 | V | H | -0.8113 | |
| 81 | D | H | -1.3768 | |
| 82 | K | H | -2.0942 | |
| 83 | S | H | -1.0713 | |
| 84 | S | H | -0.9319 | |
| 85 | S | H | -1.0677 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.3951 | |
| 89 | M | H | 0.0000 | |
| 90 | E | H | -1.1937 | |
| 91 | L | H | 0.0000 | |
| 92 | R | H | -1.3602 | |
| 93 | S | H | -1.0831 | |
| 94 | L | H | 0.0000 | |
| 95 | T | H | -1.2703 | |
| 96 | S | H | -1.4329 | |
| 97 | E | H | -2.0591 | |
| 98 | D | H | 0.0000 | |
| 99 | S | H | -0.7435 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | -0.0087 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | K | H | 0.0000 | |
| 107 | T | H | 0.1816 | |
| 108 | G | H | 0.0000 | |
| 109 | E | H | -1.0051 | |
| 110 | W | H | 0.9151 | |
| 111 | T | H | 0.5275 | |
| 112 | V | H | 1.4006 | |
| 113 | G | H | 0.0000 | |
| 114 | I | H | 0.2738 | |
| 115 | F | H | 0.0000 | |
| 116 | D | H | -0.6699 | |
| 117 | V | H | -0.2042 | |
| 118 | W | H | 0.0000 | |
| 119 | G | H | 0.0000 | |
| 120 | T | H | -0.5854 | |
| 121 | G | H | -0.3796 | |
| 122 | T | H | 0.0000 | |
| 123 | T | H | -0.2205 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | -0.1984 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.5756 | |
| 128 | S | H | -0.7413 | |
| 1 | Q | L | -0.7732 | |
| 2 | I | L | 0.0000 | |
| 3 | V | L | 1.2481 | |
| 4 | L | L | 0.0000 | |
| 5 | T | L | 0.0749 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.1296 | |
| 8 | P | L | 0.2383 | |
| 9 | A | L | 0.5393 | |
| 10 | I | L | 1.3770 | |
| 11 | M | L | 0.3538 | |
| 12 | S | L | -0.7392 | |
| 13 | A | L | 0.0000 | |
| 14 | S | L | -1.5000 | |
| 15 | P | L | -1.3175 | |
| 16 | G | L | -1.2204 | |
| 17 | E | L | -2.1173 | |
| 18 | K | L | -2.1001 | |
| 19 | V | L | 0.0000 | |
| 20 | T | L | -0.6443 | |
| 21 | I | L | 0.0000 | |
| 22 | S | L | -0.3282 | |
| 23 | C | L | 0.0000 | |
| 24 | S | L | -0.2120 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | 0.0190 | |
| 27 | S | L | -0.3044 | |
| 28 | S | L | -0.6478 | |
| 29 | V | L | 0.0000 | |
| 37 | S | L | -0.5180 | |
| 38 | Y | L | -0.2129 | |
| 39 | M | L | 0.0000 | |
| 40 | Y | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | F | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | -0.9590 | |
| 45 | K | L | -1.2137 | |
| 46 | P | L | -0.7724 | |
| 47 | G | L | -0.7965 | |
| 48 | S | L | -0.8001 | |
| 49 | S | L | -0.6127 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -1.3282 | |
| 52 | P | L | 0.0000 | |
| 53 | W | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | -0.2760 | |
| 56 | R | L | -0.9463 | |
| 57 | T | L | 0.0000 | |
| 65 | S | L | -0.8188 | |
| 66 | N | L | -1.0013 | |
| 67 | L | L | -0.3211 | |
| 68 | A | L | -0.4689 | |
| 69 | S | L | -0.4752 | |
| 70 | G | L | -0.5688 | |
| 71 | V | L | 0.0000 | |
| 72 | P | L | -0.3806 | |
| 74 | G | L | -0.5340 | |
| 75 | R | L | 0.0000 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.4719 | |
| 78 | G | L | -0.5705 | |
| 79 | S | L | -0.6827 | |
| 80 | G | L | -0.6302 | |
| 83 | S | L | -0.5738 | |
| 84 | G | L | -0.6054 | |
| 85 | S | L | -0.6133 | |
| 86 | S | L | -0.6716 | |
| 87 | Y | L | 0.0000 | |
| 88 | S | L | -0.3855 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.4083 | |
| 91 | V | L | 0.0000 | |
| 92 | S | L | -0.7679 | |
| 93 | Y | L | -0.4054 | |
| 94 | M | L | 0.0000 | |
| 95 | E | L | -0.9246 | |
| 96 | A | L | -1.1019 | |
| 97 | E | L | -1.4737 | |
| 98 | D | L | 0.0000 | |
| 99 | A | L | -1.1837 | |
| 100 | A | L | 0.0000 | |
| 101 | T | L | -0.6302 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | Y | L | 0.2341 | |
| 108 | H | L | -0.4660 | |
| 109 | S | L | -0.3283 | |
| 114 | Y | L | 0.0303 | |
| 115 | P | L | -0.6543 | |
| 116 | R | L | 0.0000 | |
| 117 | T | L | 0.0000 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -0.7568 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -0.7266 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -1.2387 | |
| 126 | I | L | -1.0656 | |
| 127 | K | L | -1.8170 |