Project name: 57926a8c0a6a9a7

Status: done

Started: 2025-06-03 05:21:10
Settings
Chain sequence(s) H: EVQLVESGGGLVQPGGSLRLSCAASGLIFRSYGMSWVRQAPGKGLEWVATINSGGTYTYYPDSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCANSYSGAMDYWGQGTLVTVSS
L: DDVLTQTPLSLPVTPGQPASISCRSSQSIVHSNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQGSLVPWTFGQGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:46)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:48)
Show buried residues

Minimal score value
-2.6629
Maximal score value
1.7609
Average score
-0.483
Total score value
-110.6146

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -1.8609
2 V H -0.4014
3 Q H -0.5775
4 L H 0.0000
5 V H 1.2805
6 E H 0.0000
7 S H -0.0719
8 G H -0.6311
9 G H 0.2021
11 G H 0.8240
12 L H 1.3335
13 V H 0.0000
14 Q H -1.4296
15 P H -1.4858
16 G H -1.4497
17 G H -1.1653
18 S H -1.0424
19 L H -0.8339
20 R H -1.7136
21 L H 0.0000
22 S H -0.2310
23 C H 0.0000
24 A H -0.0747
25 A H 0.0000
26 S H -0.4744
27 G H -0.6883
28 L H 0.0000
29 I H 1.2459
30 F H 0.0000
35 R H -1.9916
36 S H -0.3993
37 Y H 0.1129
38 G H -0.1900
39 M H 0.0000
40 S H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.6087
45 A H -0.9948
46 P H -0.8055
47 G H -1.4646
48 K H -2.3479
49 G H -1.5803
50 L H 0.0000
51 E H -0.9991
52 W H 0.0000
53 V H 0.0000
54 A H 0.0000
55 T H 0.0000
56 I H 0.0000
57 N H -0.3503
58 S H -0.8360
59 G H -1.0366
62 G H -0.5834
63 T H 0.2117
64 Y H 1.1432
65 T H 0.7849
66 Y H 0.8129
67 Y H -0.3697
68 P H -1.2522
69 D H -2.6629
70 S H -1.7512
71 V H 0.0000
72 K H -2.5421
74 G H -1.7442
75 R H -1.4518
76 F H 0.0000
77 T H -0.7586
78 I H 0.0000
79 S H -0.2992
80 R H -1.2320
81 D H -1.7166
82 N H -1.9059
83 S H -1.7726
84 K H -2.5835
85 N H -1.9885
86 T H -1.1670
87 L H 0.0000
88 Y H -0.4378
89 L H 0.0000
90 Q H -1.0929
91 M H 0.0000
92 N H -1.3100
93 S H -1.2580
94 L H 0.0000
95 R H -2.3315
96 A H -1.7267
97 E H -2.2222
98 D H 0.0000
99 T H -0.3611
100 A H 0.0000
101 V H 0.8659
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 N H 0.0000
107 S H 0.6457
108 Y H 1.2943
109 S H 0.4722
113 G H 0.2004
114 A H 0.0000
115 M H 0.0000
116 D H 0.0000
117 Y H 0.7187
118 W H 0.1972
119 G H 0.0000
120 Q H -0.9047
121 G H 0.0419
122 T H 0.6698
123 L H 1.5988
124 V H 0.0000
125 T H 0.3002
126 V H 0.0000
127 S H -0.5800
128 S H -0.5198
1 D L -1.2061
2 D L 0.0000
3 V L 0.6468
4 L L 0.0000
5 T L -0.4466
6 Q L 0.0000
7 T L -0.1285
8 P L 0.2821
9 L L 0.9510
10 S L 0.0510
11 L L -0.0423
12 P L -0.7897
13 V L 0.0000
14 T L -1.3926
15 P L -1.4071
16 G L -1.6109
17 Q L -1.9724
18 P L -1.5422
19 A L 0.0000
20 S L -0.6862
21 I L 0.0000
22 S L -0.7676
23 C L 0.0000
24 R L -2.2202
25 S L 0.0000
26 S L -0.9417
27 Q L -1.4693
28 S L -0.8434
29 I L 0.0000
30 V L 0.3428
31 H L -0.4989
32 S L -0.9046
34 N L -1.6807
35 G L -1.1732
36 N L -0.9895
37 T L -0.2359
38 Y L 0.1067
39 L L 0.0000
40 E L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 L L 0.0000
44 Q L -0.8063
45 K L -1.1671
46 P L -0.8449
47 G L -1.3375
48 Q L -1.8734
49 S L -1.1587
50 P L 0.0000
51 Q L -0.6688
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.3349
56 K L -0.5812
57 V L -0.4724
65 S L -0.8213
66 N L -1.3024
67 R L -1.7251
68 F L -0.6524
69 S L -0.5881
70 G L -0.8068
71 V L -0.9070
72 P L -1.1495
74 D L -2.1548
75 R L 0.0000
76 F L 0.0000
77 S L -1.2390
78 G L 0.0000
79 S L -0.6725
80 G L -0.9067
83 S L -0.7275
84 G L -0.8175
85 T L -1.4304
86 D L -1.8998
87 F L 0.0000
88 T L -0.8974
89 L L 0.0000
90 K L -1.3169
91 I L 0.0000
92 S L -1.6331
93 R L -2.0784
94 V L 0.0000
95 E L -1.5576
96 A L -1.1581
97 E L -1.6259
98 D L 0.0000
99 V L -0.4774
100 G L 0.0000
101 V L -0.2749
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 F L 0.0000
106 Q L 0.0000
107 G L 0.0000
108 S L 0.0000
109 L L 0.9896
114 V L 1.7609
115 P L 0.7247
116 W L 0.7769
117 T L 0.2260
118 F L 0.0000
119 G L 0.0000
120 Q L -0.9537
121 G L 0.0000
122 T L 0.0000
123 K L -0.8018
124 V L 0.0000
125 E L -1.0918
126 I L -0.6293
127 K L -1.6756
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Laboratory of Theory of Biopolymers 2018