Project name: comprehensive

Status: done

Started: 2025-12-30 23:28:57
Settings
Chain sequence(s) A: GIVEQCCTSICSLDQLEDYCNDKDHELCGSHLVEALYLVCGHRGFFYTPKK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:48)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:49)
Show buried residues

Minimal score value
-4.5062
Maximal score value
2.7759
Average score
-0.88
Total score value
-44.8817

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.8093
2 I A -0.5793
3 V A 0.1690
4 E A -1.5494
5 Q A -0.4436
6 C A 0.0000
7 C A 0.2323
8 T A -0.3242
9 S A 0.7741
10 I A 2.3099
11 C A 0.0000
12 S A -0.6452
13 L A -1.7775
14 D A -3.1663
15 Q A -2.3756
16 L A 0.0000
17 E A -3.0871
18 D A -3.6306
19 Y A -2.7455
20 C A -3.0004
21 N A -4.0720
22 D A -4.5062
23 K A -4.0859
24 D A -3.9106
25 H A -3.2542
26 E A -2.9020
27 L A -1.3497
28 C A -1.1739
29 G A -0.7630
30 S A -0.9083
31 H A -1.4119
32 L A 0.0000
33 V A 0.4324
34 E A -0.3911
35 A A 0.7521
36 L A 0.0000
37 Y A 2.0560
38 L A 2.3622
39 V A 2.5050
40 C A 0.0000
41 G A 0.0384
42 H A -1.4151
43 R A -1.5871
44 G A 0.0716
45 F A 1.7532
46 F A 2.7759
47 Y A 1.5440
48 T A -0.0209
49 P A -1.3644
50 K A -2.8439
51 K A -2.5636
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Laboratory of Theory of Biopolymers 2018