| Chain sequence(s) |
H: QVQLVESGGGLVQPGGSLRLSCAASRFTFSIYYMSWVRQAPGKGPEWVSSISSDGRLTRYVDSVKGRFTISRDNAKNTLYLQMNSLKAEDTALYYCARGSDGSGLRGQGTQVTVSS
input PDB |
| Selected Chain(s) | H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with H chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:59)
[INFO] Main: Simulation completed successfully. (00:00:59)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.5126 | |
| 2 | V | H | -1.0088 | |
| 3 | Q | H | -0.9169 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.8999 | |
| 6 | E | H | 0.0000 | |
| 7 | S | H | -0.4746 | |
| 8 | G | H | -1.0652 | |
| 9 | G | H | -0.6171 | |
| 11 | G | H | 0.0793 | |
| 12 | L | H | 1.0904 | |
| 13 | V | H | -0.0019 | |
| 14 | Q | H | -1.3404 | |
| 15 | P | H | -1.4691 | |
| 16 | G | H | -1.4866 | |
| 17 | G | H | -1.0582 | |
| 18 | S | H | -1.3111 | |
| 19 | L | H | -0.8325 | |
| 20 | R | H | -1.8799 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.3009 | |
| 23 | C | H | 0.0000 | |
| 24 | A | H | -0.0301 | |
| 25 | A | H | -0.8307 | |
| 26 | S | H | -1.1287 | |
| 27 | R | H | -2.2203 | |
| 28 | F | H | -0.7527 | |
| 29 | T | H | 0.1127 | |
| 30 | F | H | 0.0000 | |
| 35 | S | H | 0.3288 | |
| 36 | I | H | 1.9162 | |
| 37 | Y | H | 1.1261 | |
| 38 | Y | H | 0.2319 | |
| 39 | M | H | 0.0000 | |
| 40 | S | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0803 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -1.0945 | |
| 45 | A | H | 0.0000 | |
| 46 | P | H | -0.9033 | |
| 47 | G | H | -1.1957 | |
| 48 | K | H | -1.6053 | |
| 49 | G | H | -1.3417 | |
| 50 | P | H | -0.9549 | |
| 51 | E | H | -0.5632 | |
| 52 | W | H | 0.2563 | |
| 53 | V | H | 0.0000 | |
| 54 | S | H | 0.0000 | |
| 55 | S | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | S | H | -0.6147 | |
| 58 | S | H | -0.4379 | |
| 59 | D | H | -1.9838 | |
| 62 | G | H | -1.7418 | |
| 63 | R | H | -1.9933 | |
| 64 | L | H | -0.6835 | |
| 65 | T | H | -0.8195 | |
| 66 | R | H | -1.7138 | |
| 67 | Y | H | -1.4122 | |
| 68 | V | H | -1.2340 | |
| 69 | D | H | -2.5297 | |
| 70 | S | H | -1.7799 | |
| 71 | V | H | 0.0000 | |
| 72 | K | H | -2.7849 | |
| 74 | G | H | -1.7755 | |
| 75 | R | H | -1.7686 | |
| 76 | F | H | 0.0000 | |
| 77 | T | H | -1.0775 | |
| 78 | I | H | 0.0000 | |
| 79 | S | H | -0.7424 | |
| 80 | R | H | -1.4705 | |
| 81 | D | H | -1.8082 | |
| 82 | N | H | -1.8990 | |
| 83 | A | H | -1.4025 | |
| 84 | K | H | -2.3078 | |
| 85 | N | H | -2.0091 | |
| 86 | T | H | -0.9895 | |
| 87 | L | H | 0.0000 | |
| 88 | Y | H | -0.5279 | |
| 89 | L | H | 0.0000 | |
| 90 | Q | H | -1.1984 | |
| 91 | M | H | 0.0000 | |
| 92 | N | H | -1.7208 | |
| 93 | S | H | -1.4610 | |
| 94 | L | H | 0.0000 | |
| 95 | K | H | -2.3377 | |
| 96 | A | H | -1.7045 | |
| 97 | E | H | -2.2112 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.8041 | |
| 100 | A | H | 0.0000 | |
| 101 | L | H | -0.3305 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | -0.3150 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | -0.6222 | |
| 107 | G | H | 0.0000 | |
| 108 | S | H | -1.2036 | |
| 109 | D | H | -2.2739 | |
| 114 | G | H | -1.5372 | |
| 115 | S | H | -0.9673 | |
| 116 | G | H | -0.7248 | |
| 117 | L | H | 0.1908 | |
| 118 | R | H | -1.0934 | |
| 119 | G | H | -0.5644 | |
| 120 | Q | H | -1.1299 | |
| 121 | G | H | 0.0000 | |
| 122 | T | H | -0.5162 | |
| 123 | Q | H | -0.8178 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | -0.1765 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.4624 | |
| 128 | S | H | -0.4838 |