Project name: EV_CACNG1

Status: done

Started: 2026-04-07 14:57:34
Settings
Chain sequence(s) E: AVLSPHCEAAHFGLWRICTKRGEKNCSYF
input PDB
Selected Chain(s) E
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations Yes
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:09)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:09)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with E chain(s) selected             (00:00:09)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:09)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:09)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:38)
[INFO]       Auto_mut: Residue number 83 from chain E and a score of 2.559 omitted from automated  
                       muatation (excluded by the user).                                           (00:00:39)
[INFO]       Auto_mut: Residue number 82 from chain E and a score of 2.192 omitted from automated  
                       muatation (excluded by the user).                                           (00:00:39)
[INFO]       Auto_mut: Residue number 51 from chain E and a score of 2.178 omitted from automated  
                       muatation (excluded by the user).                                           (00:00:39)
[INFO]       Auto_mut: Residue number 53 from chain E and a score of 2.028 omitted from automated  
                       muatation (excluded by the user).                                           (00:00:39)
[INFO]       Auto_mut: Residue number 34 from chain E and a score of 1.920 omitted from automated  
                       muatation (excluded by the user).                                           (00:00:39)
[INFO]       Auto_mut: Residue number 54 from chain E and a score of 1.690 omitted from automated  
                       muatation (excluded by the user).                                           (00:00:39)
[INFO]       Auto_mut: Residue number 33 from chain E and a score of 1.218 omitted from automated  
                       muatation (excluded by the user).                                           (00:00:39)
[INFO]       Auto_mut: Residue number 52 from chain E and a score of 1.072 omitted from automated  
                       muatation (excluded by the user).                                           (00:00:39)
[INFO]       Auto_mut: Residue number 35 from chain E and a score of 0.558 omitted from automated  
                       muatation (excluded by the user).                                           (00:00:39)
[INFO]       Auto_mut: Residue number 81 from chain E and a score of 0.394 omitted from automated  
                       muatation (excluded by the user).                                           (00:00:39)
[INFO]       Auto_mut: Residue number 50 from chain E and a score of 0.197 omitted from automated  
                       muatation (excluded by the user).                                           (00:00:39)
[INFO]       Auto_mut: Residue number 55 from chain E and a score of 0.188 omitted from automated  
                       muatation (excluded by the user).                                           (00:00:39)
[INFO]       Auto_mut: Residue number 49 from chain E and a score of 0.000 omitted from automated  
                       muatation (excluded by the user).                                           (00:00:39)
[INFO]       Auto_mut: Residue number 56 from chain E and a score of 0.000 omitted from automated  
                       muatation (excluded by the user).                                           (00:00:39)
[CRITICAL]   Auto_mut: Couldn't find residues suitable for automated mutations (exceeding a        
                       threshold of -0.20). No automated mutations performed.                      (00:00:39)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:39)
Show buried residues

Minimal score value
-4.2245
Maximal score value
2.5589
Average score
-0.6949
Total score value
-20.1522

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
33 A E 1.2181
34 V E 1.9198
35 L E 0.5584
36 S E -0.6354
37 P E -0.8208
38 H E -1.2907
46 C E -1.7789
47 E E -3.1218
48 A E -1.8324
49 A E 0.0000
50 H E 0.1971
51 F E 2.1783
52 G E 1.0723
53 L E 2.0283
54 W E 1.6905
55 R E 0.1884
56 I E 0.0000
57 C E -0.7994
58 T E -2.4951
59 K E -4.1269
60 R E -3.9645
76 G E -2.6251
77 E E -4.1754
78 K E -4.2245
79 N E -3.1692
80 C E -1.2879
81 S E 0.3936
82 Y E 2.1921
83 F E 2.5589
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Automated mutations analysis

In the automated mutations mode, the server selects aggregation prone resides and each selected residue is mutated to glutamic acid, lysine, aspartic acid and arginine. The table below shows 2 best scored mutants for each mutated residue. Protein variants are ordered according to the mutation effect they had on protein stability (energetic effect) together with the difference in the average per-residue aggregation score between the wild type and the mutant (in the table green values indicate a positive change, grey are neutral, and orange/red mean destabilizing or more aggregation prone mutants).
Summary for all the mutants can be found in this CSV file.

It seems that no suitable candidates for mutation were found. Please see the simualtion's log


Laboratory of Theory of Biopolymers 2018