Project name: query_structure

Status: done

Started: 2026-03-16 23:00:46
Settings
Chain sequence(s) A: CKQADEPCDVFSLDCCTGICLGVCMW
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:06)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:07)
Show buried residues

Minimal score value
-2.0388
Maximal score value
2.6076
Average score
0.4221
Total score value
10.9739

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 C A 0.8579
2 K A -0.8342
3 Q A -1.5754
4 A A -1.0148
5 D A -2.0388
6 E A -1.8089
7 P A -1.1480
8 C A -0.1582
9 D A -0.0542
10 V A 1.7918
11 F A 2.4130
12 S A 1.4854
13 L A 2.0923
14 D A 0.0000
15 C A 0.0000
16 C A 0.9817
17 T A 0.7487
18 G A 1.3224
19 I A 2.6076
20 C A 0.0000
21 L A 2.1202
22 G A 0.3248
23 V A 0.0912
24 C A 0.0000
25 M A 1.5062
26 W A 1.2632
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Laboratory of Theory of Biopolymers 2018