Project name: BBN-8subset-2ndCassette

Status: done

Started: 2026-05-19 08:37:18
Settings
Chain sequence(s) A: MDAMKRGLCCVLLLCGAVFVSPSQEIHARSACGSLSPASQTPPPSPPPPLVPPVVLGSPKPEEIPAAWIPSGTTILNCFDERALVFTSRPVSVAETIFIKVTRSEFQSEKSKISKFHFLVANSQSKMKSPRGRRGGDVYTVAGSSGLSQVPSRCAARGMSLWDQRGAYEVARASLLSKDRRKCTQHNRLREFFCPEHGECICHIRNLVFSIDLGPFSFPFYLQRIIRLSYPYDVPDYA
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:04)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:04)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:04)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:04)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:04)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:04)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:06)
Show buried residues

Minimal score value
-4.2284
Maximal score value
4.2411
Average score
0.0384
Total score value
9.1396

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.1686
2 D A -1.8671
3 A A -1.0865
4 M A -0.4660
5 K A -2.0235
6 R A -2.0799
7 G A -0.3686
8 L A 1.3476
9 C A 2.0119
10 C A 2.6570
11 V A 3.6733
12 L A 4.1226
13 L A 4.2411
14 L A 4.0317
15 C A 3.4337
16 G A 2.7333
17 A A 2.8953
18 V A 3.7082
19 F A 3.5702
20 V A 2.9445
21 S A 1.1241
22 P A -0.3353
23 S A -0.9776
24 Q A -1.8732
25 E A -1.7716
26 I A 0.1309
27 H A -1.0985
28 A A -1.0575
29 R A -1.8707
30 S A -1.0240
31 A A -0.2290
32 C A 0.2545
33 G A 0.1287
34 S A 0.4336
35 L A 1.1810
36 S A 0.3351
37 P A -0.1614
38 A A -0.5337
39 S A -0.8904
40 Q A -1.4471
41 T A -0.9161
42 P A -0.8464
43 P A -0.7446
44 P A -0.6423
45 S A -0.6530
46 P A -0.6633
47 P A -0.4404
48 P A 0.0300
49 P A 0.7297
50 L A 2.0861
51 V A 2.4908
52 P A 1.5024
53 P A 1.7654
54 V A 3.0775
55 V A 3.1342
56 L A 2.5405
57 G A 0.6343
58 S A -0.3595
59 P A -1.5623
60 K A -2.7695
61 P A -2.2194
62 E A -3.0403
63 E A -2.8037
64 I A -0.4409
65 P A 0.1086
66 A A 0.4298
67 A A 0.9290
68 W A 1.6824
69 I A 1.4250
70 P A 0.1639
71 S A -0.2394
72 G A -0.6354
73 T A 0.2837
74 T A 1.0610
75 I A 2.7229
76 L A 2.7846
77 N A 0.8154
78 C A 0.7804
79 F A 0.5419
80 D A -2.1259
81 E A -2.8150
82 R A -2.4077
83 A A -0.0127
84 L A 2.5334
85 V A 3.6017
86 F A 3.3683
87 T A 1.1850
88 S A -0.4226
89 R A -1.5106
90 P A -0.2679
91 V A 1.5426
92 S A 1.0279
93 V A 1.7425
94 A A 0.4349
95 E A -0.8843
96 T A 0.9124
97 I A 2.7498
98 F A 3.9733
99 I A 3.7450
100 K A 1.1797
101 V A 1.6979
102 T A -0.7553
103 R A -2.0488
104 S A -1.4144
105 E A -1.8065
106 F A -0.1536
107 Q A -1.5252
108 S A -1.8076
109 E A -3.0238
110 K A -3.0054
111 S A -1.9541
112 K A -1.5883
113 I A 0.6901
114 S A -0.1685
115 K A -0.5882
116 F A 1.5306
117 H A 1.0447
118 F A 3.0305
119 L A 3.1731
120 V A 2.5846
121 A A 0.7716
122 N A -0.9750
123 S A -1.4118
124 Q A -2.0021
125 S A -1.7912
126 K A -2.0392
127 M A -0.8760
128 K A -1.8078
129 S A -1.5652
130 P A -1.6118
131 R A -2.6225
132 G A -2.7975
133 R A -3.4325
134 R A -3.1692
135 G A -2.2301
136 G A -1.6496
137 D A -0.9708
138 V A 1.5608
139 Y A 2.1714
140 T A 1.6769
141 V A 2.1568
142 A A 0.7482
143 G A -0.2922
144 S A -0.4842
145 S A -0.2992
146 G A -0.0884
147 L A 1.0589
148 S A 0.2493
149 Q A -0.1926
150 V A 0.9232
151 P A -0.1722
152 S A -0.7327
153 R A -1.4097
154 C A -0.4932
155 A A -0.5543
156 A A -0.8247
157 R A -1.7077
158 G A -0.7069
159 M A 0.2105
160 S A 0.3806
161 L A 0.9409
162 W A 0.2010
163 D A -1.6545
164 Q A -1.9761
165 R A -2.2437
166 G A -1.6254
167 A A -0.8920
168 Y A -0.6317
169 E A -1.2718
170 V A 0.8005
171 A A 0.6201
172 R A -0.3107
173 A A 0.3780
174 S A 0.4496
175 L A 1.0348
176 L A 0.6894
177 S A -0.9495
178 K A -2.2727
179 D A -2.9367
180 R A -3.9522
181 R A -4.2284
182 K A -3.5523
183 C A -2.0471
184 T A -1.6403
185 Q A -2.3195
186 H A -1.8896
187 N A -3.3005
188 R A -3.3078
189 L A -1.6210
190 R A -2.6809
191 E A -1.7047
192 F A 1.0380
193 F A 0.5663
194 C A -0.4413
195 P A -1.2057
196 E A -2.5416
197 H A -2.3713
198 G A -1.6836
199 E A -1.0601
200 C A 0.0000
201 I A 2.2327
202 C A 1.0681
203 H A -0.5937
204 I A 0.4865
205 R A -1.2641
206 N A -0.5903
207 L A 2.0796
208 V A 3.5961
209 F A 3.5339
210 S A 2.4394
211 I A 1.6516
212 D A -0.6056
213 L A 1.4207
214 G A 0.3302
215 P A 0.8100
216 F A 2.3915
217 S A 2.1176
218 F A 3.4091
219 P A 2.0505
220 F A 2.5591
221 Y A 2.3156
222 L A 1.3065
223 Q A -0.3987
224 R A -0.7795
225 I A 1.2102
226 I A 1.4150
227 R A -0.5298
228 L A 1.1337
229 S A 1.2605
230 Y A 1.6442
231 P A 0.7903
232 Y A 1.1337
233 D A -0.4447
234 V A 0.8380
235 P A -0.2215
236 D A -1.0429
237 Y A 0.6436
238 A A 0.1688
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018