| Chain sequence(s) |
A: GGKGHFG
C: GGKGHFG B: GGKGHFG E: GGKGHFG D: GGKGHFG G: GGKGHFG F: GGKGHFG I: GGKGHFG H: GGKGHFG K: GGKGHFG J: GGKGHFG M: GGKGHFG L: GGKGHFG O: GGKGHFG N: GGKGHFG Q: GGKGHFG P: GGKGHFG S: GGKGHFG R: GGKGHFG T: GGKGHFG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:03)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:03)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:03)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:03)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:03)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:06:51)
[INFO] Main: Simulation completed successfully. (00:06:59)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.6254 | |
| 2 | G | A | 0.0000 | |
| 3 | K | A | -1.9828 | |
| 4 | G | A | 0.0000 | |
| 5 | H | A | -1.3897 | |
| 6 | F | A | 0.0000 | |
| 7 | G | A | -1.5133 | |
| 1 | G | B | -1.8722 | |
| 2 | G | B | 0.0000 | |
| 3 | K | B | -3.0766 | |
| 4 | G | B | 0.0000 | |
| 5 | H | B | -1.6517 | |
| 6 | F | B | 0.0000 | |
| 7 | G | B | -1.6677 | |
| 1 | G | C | -1.5466 | |
| 2 | G | C | -2.3623 | |
| 3 | K | C | -2.7031 | |
| 4 | G | C | 0.0000 | |
| 5 | H | C | -1.5756 | |
| 6 | F | C | 0.0000 | |
| 7 | G | C | -1.8138 | |
| 1 | G | D | -1.1434 | |
| 2 | G | D | -1.7885 | |
| 3 | K | D | -2.8393 | |
| 4 | G | D | -1.8570 | |
| 5 | H | D | -1.1435 | |
| 6 | F | D | 0.7786 | |
| 7 | G | D | -0.5986 | |
| 1 | G | E | -2.3797 | |
| 2 | G | E | -3.0123 | |
| 3 | K | E | -3.2819 | |
| 4 | G | E | -2.2366 | |
| 5 | H | E | -1.9341 | |
| 6 | F | E | -1.2146 | |
| 7 | G | E | -1.1266 | |
| 1 | G | F | -2.2791 | |
| 2 | G | F | 0.0000 | |
| 3 | K | F | -3.5008 | |
| 4 | G | F | 0.0000 | |
| 5 | H | F | -2.1764 | |
| 6 | F | F | 0.0000 | |
| 7 | G | F | -1.5442 | |
| 1 | G | G | -1.8789 | |
| 2 | G | G | -2.3063 | |
| 3 | K | G | -2.8859 | |
| 4 | G | G | 0.0000 | |
| 5 | H | G | -1.9702 | |
| 6 | F | G | 0.0000 | |
| 7 | G | G | -1.4309 | |
| 1 | G | H | -1.7764 | |
| 2 | G | H | 0.0000 | |
| 3 | K | H | -2.8674 | |
| 4 | G | H | 0.0000 | |
| 5 | H | H | -1.7392 | |
| 6 | F | H | 0.0000 | |
| 7 | G | H | -1.3882 | |
| 1 | G | I | -1.8017 | |
| 2 | G | I | 0.0000 | |
| 3 | K | I | -2.9241 | |
| 4 | G | I | 0.0000 | |
| 5 | H | I | -1.9685 | |
| 6 | F | I | 0.0000 | |
| 7 | G | I | -1.5412 | |
| 1 | G | J | -1.5722 | |
| 2 | G | J | -1.8538 | |
| 3 | K | J | -2.4270 | |
| 4 | G | J | 0.0000 | |
| 5 | H | J | -2.0358 | |
| 6 | F | J | 0.0000 | |
| 7 | G | J | -1.7777 | |
| 1 | G | K | -1.2843 | |
| 2 | G | K | -1.8212 | |
| 3 | K | K | -2.6721 | |
| 4 | G | K | 0.0000 | |
| 5 | H | K | -1.7534 | |
| 6 | F | K | 0.0000 | |
| 7 | G | K | -1.8660 | |
| 1 | G | L | -1.6544 | |
| 2 | G | L | -1.9289 | |
| 3 | K | L | -2.3931 | |
| 4 | G | L | 0.0000 | |
| 5 | H | L | -2.0234 | |
| 6 | F | L | 0.0000 | |
| 7 | G | L | -1.8102 | |
| 1 | G | M | -1.2700 | |
| 2 | G | M | -1.5246 | |
| 3 | K | M | -2.4403 | |
| 4 | G | M | -2.0283 | |
| 5 | H | M | -2.0010 | |
| 6 | F | M | -1.7824 | |
| 7 | G | M | -1.2993 | |
| 1 | G | N | -1.4614 | |
| 2 | G | N | -1.8317 | |
| 3 | K | N | -2.8388 | |
| 4 | G | N | -1.3571 | |
| 5 | H | N | -0.9490 | |
| 6 | F | N | 0.6382 | |
| 7 | G | N | -0.1469 | |
| 1 | G | O | -1.7196 | |
| 2 | G | O | -2.1635 | |
| 3 | K | O | -2.7491 | |
| 4 | G | O | 0.0000 | |
| 5 | H | O | -1.5614 | |
| 6 | F | O | 0.0000 | |
| 7 | G | O | -0.8796 | |
| 1 | G | P | -1.9815 | |
| 2 | G | P | 0.0000 | |
| 3 | K | P | -2.6954 | |
| 4 | G | P | 0.0000 | |
| 5 | H | P | -1.8051 | |
| 6 | F | P | 0.0000 | |
| 7 | G | P | -1.1979 | |
| 1 | G | Q | -2.1673 | |
| 2 | G | Q | -2.3232 | |
| 3 | K | Q | -2.5055 | |
| 4 | G | Q | 0.0000 | |
| 5 | H | Q | -1.5016 | |
| 6 | F | Q | 0.0000 | |
| 7 | G | Q | -1.3841 | |
| 1 | G | R | -2.0714 | |
| 2 | G | R | -2.3489 | |
| 3 | K | R | -2.2975 | |
| 4 | G | R | 0.0000 | |
| 5 | H | R | -1.4675 | |
| 6 | F | R | 0.0000 | |
| 7 | G | R | -1.4000 | |
| 1 | G | S | -1.6648 | |
| 2 | G | S | 0.0000 | |
| 3 | K | S | -1.9390 | |
| 4 | G | S | 0.0000 | |
| 5 | H | S | -1.3668 | |
| 6 | F | S | 0.0000 | |
| 7 | G | S | -1.4504 | |
| 1 | G | T | -1.0077 | |
| 2 | G | T | -1.3164 | |
| 3 | K | T | -1.3636 | |
| 4 | G | T | 0.0000 | |
| 5 | H | T | 0.0000 | |
| 6 | F | T | -0.7742 | |
| 7 | G | T | -1.4073 |