Project name: CM382-387

Status: done

Started: 2026-05-12 12:39:04
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Chain sequence(s) A: NFVVIK
C: NFVVIK
B: NFVVIK
E: NFVVIK
D: NFVVIK
G: NFVVIK
F: NFVVIK
I: NFVVIK
H: NFVVIK
J: NFVVIK
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,J
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:48)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:51)
Show buried residues

Minimal score value
-2.3138
Maximal score value
2.645
Average score
0.0459
Total score value
2.7568

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 N E -1.3950
2 F E 0.0000
3 V E 1.1550
4 V E 0.0000
5 I E 1.1642
6 K E -0.8850
1 N C -1.4822
2 F C 0.0000
3 V C 1.2396
4 V C 0.0000
5 I C 1.5068
6 K C 0.0293
1 N A -0.6936
2 F A 1.1578
3 V A 2.2170
4 V A 2.2085
5 I A 1.7583
6 K A -0.9307
1 N B -1.0104
2 F B 0.8519
3 V B 1.1608
4 V B 1.0380
5 I B 0.5289
6 K B -1.5146
1 N D -1.9612
2 F D -0.9197
3 V D 0.0000
4 V D 0.0000
5 I D -0.0621
6 K D -1.6397
1 N I -0.8023
2 F I 0.8682
3 V I 2.6450
4 V I 2.1880
5 I I 1.8570
6 K I -0.9563
1 N G -1.4345
2 F G 0.0000
3 V G 1.4527
4 V G 0.0000
5 I G 1.8288
6 K G 0.0092
1 N F -2.2130
2 F F -0.8652
3 V F 0.0000
4 V F 0.0000
5 I F 0.0000
6 K F -2.3138
1 N H -2.1069
2 F H -1.0868
3 V H 0.0000
4 V H 0.0000
5 I H 0.0000
6 K H -1.1434
1 N J -0.8059
2 F J 1.1831
3 V J 1.1490
4 V J 1.2429
5 I J 0.1805
6 K J -1.6414
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Laboratory of Theory of Biopolymers 2018