Project name: seed6

Status: done

Started: 2026-03-03 09:07:00
Settings
Chain sequence(s) A: NASCEYSASHKQDLLLGSTGSISCPSLSCQSDAQSPAVTWYKNGKLLSVERSNRIVVDEVYDYHQGTYVCDYTQSDTVSSWTVRAVVQVRTIVGDTKDKTHTCPPCPAPEAAGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALGAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK
B: NASCEYSASHKQDLLLGSTGSISCPSLSCQSDAQSPAVTWYKNGKLLSVERSNRIVVDEVYDYHQGTYVCDYTQSDTVSSWTVRAVVQVRTIVGDTKDKTHTCPPCPAPEAAGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALGAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:13:15)
[INFO]       Main:     Simulation completed successfully.                                          (00:13:24)
Show buried residues

Minimal score value
-4.0602
Maximal score value
2.0128
Average score
-0.7025
Total score value
-455.2321

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 N A -1.3934
2 A A -0.7294
3 S A -0.3424
4 C A 0.0048
5 E A -0.9903
6 Y A 0.6100
7 S A 0.0575
8 A A -0.1601
9 S A -0.4259
10 H A -0.9871
11 K A -1.1070
12 Q A -0.7996
13 D A -0.5548
14 L A 0.0000
15 L A 0.9894
16 L A 1.1654
17 G A -0.0162
18 S A -0.4144
19 T A -0.7290
20 G A -0.2083
21 S A -0.1525
22 I A 0.0000
23 S A -0.4103
24 C A 0.0000
25 P A 0.0000
26 S A -0.2289
27 L A 0.0000
28 S A -0.1132
29 C A 0.3432
30 Q A -0.7356
31 S A -0.9782
32 D A -1.6771
33 A A -1.3923
34 Q A -1.8838
35 S A 0.0000
36 P A -0.9784
37 A A -0.4624
38 V A 0.0000
39 T A 0.0000
40 W A 0.0000
41 Y A 0.0000
42 K A -0.3515
43 N A -0.5989
44 G A 0.0000
45 K A -0.2219
46 L A 0.9724
47 L A 1.0603
48 S A 0.7407
49 V A 0.7782
50 E A -0.0221
51 R A -0.9143
52 S A -0.8389
53 N A 0.0000
54 R A -0.7316
55 I A 0.0000
56 V A 0.5077
57 V A -0.2972
58 D A -1.5077
59 E A -1.0034
60 V A 0.0000
61 Y A 0.0041
62 D A 0.2161
63 Y A 1.3030
64 H A -0.0184
65 Q A -0.8240
66 G A 0.0000
67 T A 0.0000
68 Y A 0.0000
69 V A 0.0000
70 C A 0.0000
71 D A 0.0000
72 Y A 0.0000
73 T A -0.3355
74 Q A -1.0723
75 S A -1.0161
76 D A -1.3019
77 T A -0.0522
78 V A 1.1436
79 S A 0.0668
80 S A -0.3039
81 W A -0.1046
82 T A -0.0388
83 V A 0.1017
84 R A -0.0692
85 A A 0.0000
86 V A 0.0000
87 V A 0.0000
88 Q A 0.0000
89 V A 0.0000
90 R A -0.6988
91 T A 0.5559
92 I A 1.3317
93 V A 2.0128
94 G A -0.0521
95 D A -2.4726
96 T A -2.4216
97 K A -3.7116
98 D A -4.0602
99 K A -3.6004
100 T A -2.2279
101 H A -2.1562
102 T A -1.3297
103 C A 0.0006
104 P A -0.0492
105 P A 0.3184
106 C A 0.5934
107 P A -0.4846
108 A A -0.6643
109 P A -1.0895
110 E A -1.9256
111 A A -1.1424
112 A A -1.0478
113 G A -0.9073
114 G A -0.7643
115 P A 0.0000
116 S A -0.3520
117 V A 0.0000
118 F A 0.0000
119 L A 0.0000
120 F A 0.0000
121 P A -0.0397
122 P A 0.0000
123 K A -0.2532
124 P A 0.0000
125 K A -0.0398
126 D A 0.0000
127 T A 0.0000
128 L A 0.0000
129 M A 0.8519
130 I A 1.7982
131 S A 0.8283
132 R A 0.0000
133 T A 0.4418
134 P A 0.0000
135 E A -0.1911
136 V A 0.0000
137 T A 0.0000
138 C A 0.0000
139 V A 0.0000
140 V A 0.0000
141 V A 0.0000
142 D A -0.9368
143 V A 0.0000
144 S A -1.9281
145 H A -2.5671
146 E A -2.9876
147 D A -2.6122
148 P A -2.5611
149 E A -3.0709
150 V A -1.9216
151 K A -2.2318
152 F A -1.1990
153 N A -1.2994
154 W A 0.0000
155 Y A -1.0244
156 V A -1.0975
157 D A -2.2321
158 G A -1.0702
159 V A 0.2179
160 E A -1.4264
161 V A -0.8264
162 H A -2.0074
163 N A -2.2302
164 A A -1.8035
165 K A -2.4686
166 T A -1.9671
167 K A -2.1548
168 P A -1.9084
169 R A -2.4510
170 E A -2.3241
171 E A -2.6519
172 Q A 0.0000
173 Y A -0.5941
174 N A -0.8319
175 S A -0.9218
176 T A -1.5213
177 Y A -1.8023
178 R A 0.0000
179 V A 0.0000
180 V A 0.0000
181 S A 0.0000
182 V A 0.0000
183 L A 0.0000
184 T A -0.3980
185 V A 0.0000
186 L A 0.5803
187 H A 0.0000
188 Q A -1.2053
189 D A -1.5042
190 W A 0.0000
191 L A -0.9630
192 N A -2.0760
193 G A -2.0738
194 K A -2.2630
195 E A -2.2907
196 Y A 0.0000
197 K A -1.6722
198 C A 0.0000
199 K A -1.4231
200 V A 0.0000
201 S A -1.4825
202 N A 0.0000
203 K A -2.6168
204 A A -1.5386
205 L A -0.7701
206 G A -0.7369
207 A A -0.5133
208 P A -0.9016
209 I A -0.6491
210 E A -1.8087
211 K A -1.2524
212 T A -1.2150
213 I A 0.0000
214 S A -1.3710
215 K A 0.0000
216 A A -1.3725
217 K A -2.3179
218 G A -1.9771
219 Q A -2.1867
220 P A -1.8638
221 R A -2.2558
222 E A -2.6788
223 P A 0.0000
224 Q A -1.2334
225 V A 0.0000
226 Y A 0.0000
227 T A -0.8089
228 L A 0.0000
229 P A -0.3980
230 P A -0.8597
231 S A 0.0000
232 R A -2.6737
233 D A -2.8210
234 E A 0.0000
235 L A -1.8510
236 T A -1.6070
237 K A -2.1819
238 N A -2.4242
239 Q A -2.1873
240 V A 0.0000
241 S A 0.0000
242 L A 0.0000
243 T A 0.0000
244 C A 0.0000
245 L A 0.0000
246 V A 0.0000
247 K A -0.6020
248 G A 0.0000
249 F A 0.0000
250 Y A -1.1793
251 P A 0.0000
252 S A -0.2366
253 D A -0.5738
254 I A -0.2351
255 A A -0.0997
256 V A 0.0000
257 E A -0.8699
258 W A 0.0000
259 E A -1.5967
260 S A 0.0000
261 N A -1.8829
262 G A -1.7502
263 Q A -2.1763
264 P A -1.7066
265 E A 0.0000
266 N A -1.9102
267 N A -1.6396
268 Y A 0.0000
269 K A 0.0000
270 T A -0.0457
271 T A 0.0000
272 P A 0.2666
273 P A -0.0715
274 V A 0.0000
275 L A 0.0536
276 D A -0.9503
277 S A -1.5424
278 D A -2.0334
279 G A -1.0221
280 S A 0.0000
281 F A -0.2539
282 F A 0.0000
283 L A 0.0000
284 Y A 0.0000
285 S A 0.0000
286 K A 0.0000
287 L A 0.0000
288 T A -0.8157
289 V A 0.0000
290 D A -2.2359
291 K A -2.4057
292 S A -2.1274
293 R A -1.9488
294 W A 0.0000
295 Q A -2.3004
296 Q A -2.1402
297 G A -1.2873
298 N A -0.9582
299 V A 0.0192
300 F A 0.0000
301 S A -0.9155
302 C A 0.0000
303 S A 0.0000
304 V A 0.0000
305 M A 0.0000
306 H A 0.0000
307 E A -1.0293
308 A A -1.5600
309 L A -1.4209
310 H A -1.7340
311 N A -1.4297
312 H A -0.8664
313 Y A -0.3647
314 T A -0.6643
315 Q A -1.0439
316 K A -1.0805
317 S A -0.5545
318 L A 0.0000
319 S A -0.2180
320 L A -0.3566
321 S A -0.6112
322 P A -1.1014
323 G A -1.4167
324 K A -2.0325
1 N B -1.4019
2 A B -0.7308
3 S B -0.3344
4 C B 0.0214
5 E B -1.0022
6 Y B 0.6063
7 S B 0.0323
8 A B -0.2300
9 S B -0.4562
10 H B -1.0232
11 K B -1.0837
12 Q B -0.7914
13 D B -0.6624
14 L B 0.0000
15 L B 0.6913
16 L B 0.7833
17 G B -0.3110
18 S B -0.5767
19 T B -0.8089
20 G B -0.3151
21 S B -0.3764
22 I B 0.0000
23 S B -0.6701
24 C B 0.0000
25 P B 0.0000
26 S B -0.2301
27 L B 0.0000
28 S B -0.1896
29 C B 0.3868
30 Q B -0.6391
31 S B -1.0748
32 D B -1.9065
33 A B -1.5160
34 Q B -1.9312
35 S B 0.0000
36 P B -0.9293
37 A B -0.4322
38 V B 0.0000
39 T B 0.0000
40 W B 0.0000
41 Y B 0.0000
42 K B -0.2283
43 N B -0.4666
44 G B -0.1593
45 K B -0.1842
46 L B 1.0589
47 L B 1.0581
48 S B 0.7901
49 V B 0.8634
50 E B -0.1862
51 R B -1.1596
52 S B -1.1552
53 N B 0.0000
54 R B -1.3715
55 I B 0.0000
56 V B 0.2160
57 V B 0.0000
58 D B -1.6570
59 E B -1.1189
60 V B 0.0000
61 Y B -0.3490
62 D B -0.2204
63 Y B 0.9829
64 H B -0.2199
65 Q B -0.8841
66 G B 0.0000
67 T B 0.0000
68 Y B 0.0000
69 V B 0.0000
70 C B 0.0000
71 D B 0.0000
72 Y B 0.0000
73 T B -0.3222
74 Q B -1.0753
75 S B -1.0398
76 D B -1.3647
77 T B -0.0841
78 V B 1.1281
79 S B 0.0666
80 S B -0.3132
81 W B -0.1254
82 T B -0.0537
83 V B 0.0664
84 R B -0.1629
85 A B 0.0000
86 V B 0.0000
87 V B 0.0000
88 Q B 0.0000
89 V B 0.0000
90 R B -0.6879
91 T B 0.2832
92 I B 0.8798
93 V B 1.1151
94 G B -0.5991
95 D B -2.7644
96 T B -2.5790
97 K B -3.7110
98 D B -4.0165
99 K B -3.6110
100 T B -2.2632
101 H B -2.2914
102 T B -1.4921
103 C B -0.5033
104 P B -0.1165
105 P B 0.2806
106 C B 0.7027
107 P B -0.4670
108 A B -0.6127
109 P B -1.1019
110 E B -1.9963
111 A B -1.1426
112 A B -1.0571
113 G B -0.9229
114 G B -0.8294
115 P B 0.0000
116 S B -0.2724
117 V B 0.0000
118 F B -0.2005
119 L B 0.0000
120 F B 0.0000
121 P B -0.0167
122 P B 0.0000
123 K B 0.0000
124 P B -0.3254
125 K B -0.0044
126 D B 0.0000
127 T B 0.0000
128 L B 0.0000
129 M B 0.8515
130 I B 1.8125
131 S B 0.8323
132 R B 0.0000
133 T B 0.4370
134 P B 0.0000
135 E B -0.3093
136 V B 0.0000
137 T B 0.0000
138 C B 0.0000
139 V B 0.0000
140 V B 0.0000
141 V B 0.0000
142 D B -0.9324
143 V B 0.0000
144 S B -1.9448
145 H B -2.5883
146 E B -3.0258
147 D B -2.6953
148 P B -2.6688
149 E B -3.1557
150 V B -1.9988
151 K B -2.2397
152 F B -1.1601
153 N B -1.1013
154 W B 0.0000
155 Y B -0.6642
156 V B -0.9239
157 D B -2.1233
158 G B -0.8717
159 V B 0.6042
160 E B -0.6281
161 V B -0.5279
162 H B -1.8741
163 N B -2.1701
164 A B -1.8469
165 K B -2.4670
166 T B -2.0638
167 K B -2.3511
168 P B -2.1730
169 R B -2.9353
170 E B -2.5538
171 E B -2.7432
172 Q B 0.0000
173 Y B -0.5753
174 N B -0.8053
175 S B -0.9089
176 T B -1.5593
177 Y B -1.9193
178 R B 0.0000
179 V B 0.0000
180 V B 0.0000
181 S B 0.0000
182 V B 0.0000
183 L B 0.0000
184 T B -0.4565
185 V B 0.0000
186 L B 0.6227
187 H B 0.0000
188 Q B -1.1949
189 D B -1.5161
190 W B 0.0000
191 L B -0.9675
192 N B -2.0870
193 G B -2.1024
194 K B -2.2883
195 E B -2.3703
196 Y B 0.0000
197 K B -1.4507
198 C B 0.0000
199 K B -1.2058
200 V B 0.0000
201 S B -1.4400
202 N B 0.0000
203 K B -2.6471
204 A B -1.5652
205 L B -0.7839
206 G B -0.7428
207 A B -0.4731
208 P B -0.8083
209 I B -0.3852
210 E B -1.3301
211 K B -0.8643
212 T B -1.0332
213 I B 0.0000
214 S B -1.4178
215 K B 0.0000
216 A B -1.4125
217 K B -2.3224
218 G B -1.9736
219 Q B -2.1751
220 P B -1.8140
221 R B -2.2031
222 E B -2.6541
223 P B 0.0000
224 Q B -1.2404
225 V B 0.0000
226 Y B 0.0000
227 T B -0.8739
228 L B 0.0000
229 P B -0.4079
230 P B -0.8703
231 S B -1.5426
232 R B -2.6732
233 D B -2.8127
234 E B 0.0000
235 L B -1.8192
236 T B -1.5863
237 K B -2.1698
238 N B -2.4298
239 Q B -2.2107
240 V B 0.0000
241 S B 0.0000
242 L B 0.0000
243 T B 0.0000
244 C B 0.0000
245 L B 0.0000
246 V B 0.0000
247 K B -0.6059
248 G B 0.0000
249 F B 0.0000
250 Y B -1.2067
251 P B 0.0000
252 S B -0.3336
253 D B -0.5784
254 I B -0.2907
255 A B -0.1151
256 V B 0.0000
257 E B -1.0182
258 W B 0.0000
259 E B -1.7527
260 S B 0.0000
261 N B -1.8898
262 G B -1.7834
263 Q B -2.2404
264 P B -1.8341
265 E B -1.6963
266 N B -1.9972
267 N B -1.6706
268 Y B 0.0000
269 K B 0.0000
270 T B -0.0440
271 T B 0.0000
272 P B 0.2578
273 P B -0.1277
274 V B 0.0000
275 L B -0.0432
276 D B -0.9847
277 S B -1.5081
278 D B -2.1178
279 G B -1.0766
280 S B 0.0000
281 F B -0.3220
282 F B 0.0000
283 L B 0.0000
284 Y B 0.0000
285 S B 0.0000
286 K B 0.0000
287 L B 0.0000
288 T B -0.8337
289 V B 0.0000
290 D B -2.2898
291 K B -2.4230
292 S B -2.1351
293 R B -1.9361
294 W B 0.0000
295 Q B -2.2930
296 Q B -2.1191
297 G B -1.2342
298 N B -0.8364
299 V B 0.0884
300 F B 0.0000
301 S B -1.1134
302 C B 0.0000
303 S B 0.0000
304 V B 0.0000
305 M B 0.0000
306 H B 0.0000
307 E B -1.0572
308 A B -1.5561
309 L B -1.4408
310 H B -1.7566
311 N B -1.4510
312 H B -0.8973
313 Y B -0.5526
314 T B -0.9765
315 Q B -1.6306
316 K B -1.4144
317 S B -0.7146
318 L B 0.0000
319 S B -0.1968
320 L B -0.3649
321 S B -0.6220
322 P B -0.9857
323 G B -1.4206
324 K B -2.0315
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Laboratory of Theory of Biopolymers 2018