Project name: query_structure

Status: done

Started: 2026-03-17 01:31:20
Settings
Chain sequence(s) A: YSRCQLQGFNCVVRSYGLPTIPCCRGLTCRSYFPGSTYGRCQRY
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:52)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:53)
Show buried residues

Minimal score value
-2.477
Maximal score value
2.0723
Average score
-0.1088
Total score value
-4.7883

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Y A 0.6628
2 S A -0.2014
3 R A -1.0631
4 C A -0.3183
5 Q A 0.1392
6 L A -0.2927
7 Q A -1.6640
8 G A -1.5082
9 F A -0.2448
10 N A -1.0621
11 C A -0.2036
12 V A 0.7327
13 V A 0.6551
14 R A -0.4175
15 S A 0.8232
16 Y A 1.2062
17 G A 0.6042
18 L A 1.9189
19 P A 0.9602
20 T A 1.2455
21 I A 1.9532
22 P A 0.9048
23 C A -0.4253
24 C A -0.8185
25 R A -1.8772
26 G A -1.6388
27 L A -1.4626
28 T A -1.3306
29 C A -0.8287
30 R A -1.3947
31 S A 0.2325
32 Y A 1.6769
33 F A 2.0723
34 P A 0.7589
35 G A 0.1275
36 S A 0.5995
37 T A 0.6500
38 Y A 0.9209
39 G A 0.0000
40 R A -1.8023
41 C A 0.0000
42 Q A -2.4770
43 R A -2.2897
44 Y A -0.3117
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Laboratory of Theory of Biopolymers 2018