| Chain sequence(s) |
A: FFGHKGG
C: FFGHKGG B: FFGHKGG D: FFGHKGG input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:28)
[INFO] Main: Simulation completed successfully. (00:00:29)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 3.0759 | |
| 2 | F | A | 2.9942 | |
| 3 | G | A | 0.6205 | |
| 4 | H | A | -1.6186 | |
| 5 | K | A | -2.5636 | |
| 6 | G | A | -2.0182 | |
| 7 | G | A | -1.6125 | |
| 1 | F | B | 3.0053 | |
| 2 | F | B | 3.1619 | |
| 3 | G | B | 0.6647 | |
| 4 | H | B | -1.4956 | |
| 5 | K | B | -2.6945 | |
| 6 | G | B | -2.2273 | |
| 7 | G | B | -1.7554 | |
| 1 | F | C | 2.8256 | |
| 2 | F | C | 2.7470 | |
| 3 | G | C | 0.3567 | |
| 4 | H | C | -1.8975 | |
| 5 | K | C | -3.0415 | |
| 6 | G | C | -2.3407 | |
| 7 | G | C | -1.9024 | |
| 1 | F | D | 2.9874 | |
| 2 | F | D | 2.9020 | |
| 3 | G | D | 0.1352 | |
| 4 | H | D | -1.9751 | |
| 5 | K | D | -2.9045 | |
| 6 | G | D | -2.4043 | |
| 7 | G | D | -1.6708 |