Project name: query_structure

Status: done

Started: 2026-03-17 00:22:47
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Chain sequence(s) A: QVQLQESGGGLVQAGGSLRLSCAASGYISDAYYMGWYRQAPGKEREFVATITHGTNTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAADPGVQSSSLETFFTFFLYWGQGTQVTVSSLE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:13)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:13)
Show buried residues

Minimal score value
-3.9454
Maximal score value
2.9308
Average score
-0.648
Total score value
-82.943

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.2613
2 V A -0.3025
3 Q A -1.6057
4 L A 0.0000
5 Q A -1.6857
6 E A 0.0000
7 S A -1.0689
8 G A -1.0114
9 G A -0.8191
10 G A -0.0622
11 L A 1.0943
12 V A 0.2855
13 Q A -0.8454
14 A A -1.1084
15 G A -1.0515
16 G A -0.8268
17 S A -1.2551
18 L A -0.9918
19 R A -2.2630
20 L A 0.0000
21 S A -0.8997
22 C A 0.0000
23 A A -1.1577
24 A A -0.6812
25 S A -0.7141
26 G A -0.0911
27 Y A 0.6513
28 I A 0.0000
29 S A -1.1224
30 D A -1.5814
31 A A 0.0000
32 Y A -0.0315
33 Y A 0.1862
34 M A 0.0000
35 G A 0.0000
36 W A 0.0000
37 Y A 0.0000
38 R A -1.8627
39 Q A -2.6161
40 A A -2.2905
41 P A -1.4752
42 G A -1.9917
43 K A -3.5835
44 E A -3.9454
45 R A -3.4701
46 E A -3.1418
47 F A -1.1596
48 V A 0.0000
49 A A 0.0000
50 T A 0.0000
51 I A 0.0000
52 T A 0.0000
53 H A -1.4746
54 G A -1.0715
55 T A -1.0536
56 N A -1.4421
57 T A -0.4432
58 Y A 0.0300
59 Y A -0.5292
60 A A -1.3941
61 D A -2.3728
62 S A -1.8076
63 V A 0.0000
64 K A -2.5465
65 G A -1.7716
66 R A -1.5292
67 F A 0.0000
68 T A -0.9023
69 I A 0.0000
70 S A -0.6584
71 R A -1.1201
72 D A -1.7202
73 N A -1.8738
74 A A -1.4063
75 K A -2.2332
76 N A -1.5447
77 T A -1.2677
78 V A 0.0000
79 Y A -0.7264
80 L A 0.0000
81 Q A -1.5802
82 M A 0.0000
83 N A -1.4186
84 S A -1.1784
85 L A 0.0000
86 K A -2.1014
87 P A -1.6326
88 E A -2.3149
89 D A 0.0000
90 T A -0.9472
91 A A 0.0000
92 V A -0.7302
93 Y A 0.0000
94 Y A -0.7807
95 C A 0.0000
96 A A 0.0000
97 A A 0.0000
98 D A 0.0000
99 P A 0.7018
100 G A 0.6833
101 V A 1.4179
102 Q A -0.4417
103 S A -0.0994
104 S A -0.2979
105 S A -0.1077
106 L A 0.8671
107 E A -0.8718
108 T A 0.4657
109 F A 1.0948
110 F A 1.5472
111 T A 1.4554
112 F A 2.9308
113 F A 0.0000
114 L A 2.3517
115 Y A 1.3486
116 W A 0.3869
117 G A -0.8436
118 Q A -1.4677
119 G A -1.0676
120 T A 0.0000
121 Q A -1.0934
122 V A 0.0000
123 T A -0.2446
124 V A 0.0000
125 S A -0.5208
126 S A -0.7106
127 L A 0.1281
128 E A -1.2550
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Laboratory of Theory of Biopolymers 2018