| Chain sequence(s) |
A: QVQLQESGGGLVQAGGSLRLSCAASGYISDAYYMGWYRQAPGKEREFVATITHGTNTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAADPGVQSSSLETFFTFFLYWGQGTQVTVSSLE
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:13)
[INFO] Main: Simulation completed successfully. (00:01:13)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.2613 | |
| 2 | V | A | -0.3025 | |
| 3 | Q | A | -1.6057 | |
| 4 | L | A | 0.0000 | |
| 5 | Q | A | -1.6857 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -1.0689 | |
| 8 | G | A | -1.0114 | |
| 9 | G | A | -0.8191 | |
| 10 | G | A | -0.0622 | |
| 11 | L | A | 1.0943 | |
| 12 | V | A | 0.2855 | |
| 13 | Q | A | -0.8454 | |
| 14 | A | A | -1.1084 | |
| 15 | G | A | -1.0515 | |
| 16 | G | A | -0.8268 | |
| 17 | S | A | -1.2551 | |
| 18 | L | A | -0.9918 | |
| 19 | R | A | -2.2630 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.8997 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -1.1577 | |
| 24 | A | A | -0.6812 | |
| 25 | S | A | -0.7141 | |
| 26 | G | A | -0.0911 | |
| 27 | Y | A | 0.6513 | |
| 28 | I | A | 0.0000 | |
| 29 | S | A | -1.1224 | |
| 30 | D | A | -1.5814 | |
| 31 | A | A | 0.0000 | |
| 32 | Y | A | -0.0315 | |
| 33 | Y | A | 0.1862 | |
| 34 | M | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | 0.0000 | |
| 38 | R | A | -1.8627 | |
| 39 | Q | A | -2.6161 | |
| 40 | A | A | -2.2905 | |
| 41 | P | A | -1.4752 | |
| 42 | G | A | -1.9917 | |
| 43 | K | A | -3.5835 | |
| 44 | E | A | -3.9454 | |
| 45 | R | A | -3.4701 | |
| 46 | E | A | -3.1418 | |
| 47 | F | A | -1.1596 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | T | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | T | A | 0.0000 | |
| 53 | H | A | -1.4746 | |
| 54 | G | A | -1.0715 | |
| 55 | T | A | -1.0536 | |
| 56 | N | A | -1.4421 | |
| 57 | T | A | -0.4432 | |
| 58 | Y | A | 0.0300 | |
| 59 | Y | A | -0.5292 | |
| 60 | A | A | -1.3941 | |
| 61 | D | A | -2.3728 | |
| 62 | S | A | -1.8076 | |
| 63 | V | A | 0.0000 | |
| 64 | K | A | -2.5465 | |
| 65 | G | A | -1.7716 | |
| 66 | R | A | -1.5292 | |
| 67 | F | A | 0.0000 | |
| 68 | T | A | -0.9023 | |
| 69 | I | A | 0.0000 | |
| 70 | S | A | -0.6584 | |
| 71 | R | A | -1.1201 | |
| 72 | D | A | -1.7202 | |
| 73 | N | A | -1.8738 | |
| 74 | A | A | -1.4063 | |
| 75 | K | A | -2.2332 | |
| 76 | N | A | -1.5447 | |
| 77 | T | A | -1.2677 | |
| 78 | V | A | 0.0000 | |
| 79 | Y | A | -0.7264 | |
| 80 | L | A | 0.0000 | |
| 81 | Q | A | -1.5802 | |
| 82 | M | A | 0.0000 | |
| 83 | N | A | -1.4186 | |
| 84 | S | A | -1.1784 | |
| 85 | L | A | 0.0000 | |
| 86 | K | A | -2.1014 | |
| 87 | P | A | -1.6326 | |
| 88 | E | A | -2.3149 | |
| 89 | D | A | 0.0000 | |
| 90 | T | A | -0.9472 | |
| 91 | A | A | 0.0000 | |
| 92 | V | A | -0.7302 | |
| 93 | Y | A | 0.0000 | |
| 94 | Y | A | -0.7807 | |
| 95 | C | A | 0.0000 | |
| 96 | A | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | D | A | 0.0000 | |
| 99 | P | A | 0.7018 | |
| 100 | G | A | 0.6833 | |
| 101 | V | A | 1.4179 | |
| 102 | Q | A | -0.4417 | |
| 103 | S | A | -0.0994 | |
| 104 | S | A | -0.2979 | |
| 105 | S | A | -0.1077 | |
| 106 | L | A | 0.8671 | |
| 107 | E | A | -0.8718 | |
| 108 | T | A | 0.4657 | |
| 109 | F | A | 1.0948 | |
| 110 | F | A | 1.5472 | |
| 111 | T | A | 1.4554 | |
| 112 | F | A | 2.9308 | |
| 113 | F | A | 0.0000 | |
| 114 | L | A | 2.3517 | |
| 115 | Y | A | 1.3486 | |
| 116 | W | A | 0.3869 | |
| 117 | G | A | -0.8436 | |
| 118 | Q | A | -1.4677 | |
| 119 | G | A | -1.0676 | |
| 120 | T | A | 0.0000 | |
| 121 | Q | A | -1.0934 | |
| 122 | V | A | 0.0000 | |
| 123 | T | A | -0.2446 | |
| 124 | V | A | 0.0000 | |
| 125 | S | A | -0.5208 | |
| 126 | S | A | -0.7106 | |
| 127 | L | A | 0.1281 | |
| 128 | E | A | -1.2550 |