Project name: query_structure

Status: done

Started: 2026-03-16 23:26:16
Settings
Chain sequence(s) A: GLPICGETCFTGKCYTPGCTCSYPICKKN
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:18)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:18)
Show buried residues

Minimal score value
-2.404
Maximal score value
1.8653
Average score
-0.0858
Total score value
-2.4894

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A 0.3209
2 L A 1.0965
3 P A -0.2193
4 I A 0.0626
5 C A -0.4793
6 G A -0.5005
7 E A -0.2839
8 T A 0.4759
9 C A 0.0000
10 F A 1.8653
11 T A 0.5678
12 G A 0.0565
13 K A -0.7775
14 C A -0.0624
15 Y A 0.8213
16 T A -0.1539
17 P A -0.4704
18 G A -1.3073
19 C A -1.4237
20 T A -0.7167
21 C A 0.4333
22 S A 0.5799
23 Y A 1.6517
24 P A 1.2310
25 I A 0.6769
26 C A 0.0000
27 K A -1.2256
28 K A -2.4040
29 N A -2.3045
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018