| Chain sequence(s) |
H: QVQLVESGGGPVEAGGSLRLSCAASGRSFSNSVMAWFRQAPGKEREFLSVLNWSSGRTSIADSVKGRFTMSRDPAKITVYLQMNGLKPEDTAVYYCAASNRGSLYTLDNQNRYEDWGQGTQVTVSS
input PDB |
| Selected Chain(s) | H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with H chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:02)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:09)
[INFO] Main: Simulation completed successfully. (00:01:10)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.7688 | |
| 2 | V | H | -1.4861 | |
| 3 | Q | H | -1.4008 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.8381 | |
| 6 | E | H | 0.0000 | |
| 7 | S | H | -0.4398 | |
| 8 | G | H | -0.9742 | |
| 9 | G | H | -0.8382 | |
| 11 | G | H | -0.6631 | |
| 12 | P | H | -0.7477 | |
| 13 | V | H | -1.1547 | |
| 14 | E | H | -2.3085 | |
| 15 | A | H | -2.0308 | |
| 16 | G | H | -1.5959 | |
| 17 | G | H | -1.3770 | |
| 18 | S | H | -1.3195 | |
| 19 | L | H | -0.9331 | |
| 20 | R | H | -1.7732 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.3699 | |
| 23 | C | H | 0.0000 | |
| 24 | A | H | 0.0742 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -1.0137 | |
| 27 | G | H | -1.5996 | |
| 28 | R | H | -1.7502 | |
| 29 | S | H | -1.1055 | |
| 30 | F | H | 0.0000 | |
| 35 | S | H | -1.0543 | |
| 36 | N | H | -1.8271 | |
| 37 | S | H | 0.0000 | |
| 38 | V | H | 0.0000 | |
| 39 | M | H | 0.0000 | |
| 40 | A | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | F | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -1.3947 | |
| 45 | A | H | -1.4597 | |
| 46 | P | H | -1.0944 | |
| 47 | G | H | -1.6939 | |
| 48 | K | H | -2.6827 | |
| 49 | E | H | -2.8934 | |
| 50 | R | H | -1.8485 | |
| 51 | E | H | -1.3829 | |
| 52 | F | H | -0.7774 | |
| 53 | L | H | 0.0000 | |
| 54 | S | H | 0.0000 | |
| 55 | V | H | 0.0000 | |
| 56 | L | H | 0.0000 | |
| 57 | N | H | -1.4142 | |
| 58 | W | H | 0.0000 | |
| 59 | S | H | -1.2074 | |
| 62 | S | H | -1.2621 | |
| 63 | G | H | -1.5281 | |
| 64 | R | H | -2.2552 | |
| 65 | T | H | -1.1271 | |
| 66 | S | H | -0.9320 | |
| 67 | I | H | -0.7861 | |
| 68 | A | H | -1.3359 | |
| 69 | D | H | -2.4907 | |
| 70 | S | H | -1.5236 | |
| 71 | V | H | 0.0000 | |
| 72 | K | H | -2.7032 | |
| 74 | G | H | -1.8872 | |
| 75 | R | H | -1.8293 | |
| 76 | F | H | 0.0000 | |
| 77 | T | H | -0.9231 | |
| 78 | M | H | 0.0000 | |
| 79 | S | H | -0.6922 | |
| 80 | R | H | -0.7776 | |
| 81 | D | H | -0.9991 | |
| 82 | P | H | -0.7834 | |
| 83 | A | H | -0.7711 | |
| 84 | K | H | -1.5437 | |
| 85 | I | H | -0.3050 | |
| 86 | T | H | 0.0000 | |
| 87 | V | H | 0.0000 | |
| 88 | Y | H | -0.5541 | |
| 89 | L | H | 0.0000 | |
| 90 | Q | H | -1.2267 | |
| 91 | M | H | 0.0000 | |
| 92 | N | H | -1.5431 | |
| 93 | G | H | -1.5166 | |
| 94 | L | H | 0.0000 | |
| 95 | K | H | -2.6614 | |
| 96 | P | H | -1.9911 | |
| 97 | E | H | -2.3325 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -1.0508 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | -0.1121 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0218 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | A | H | 0.0000 | |
| 107 | S | H | 0.0000 | |
| 108 | N | H | -1.7771 | |
| 109 | R | H | -2.4373 | |
| 110 | G | H | -1.0501 | |
| 111 | S | H | -0.0045 | |
| 111A | L | H | 1.7619 | |
| 111B | Y | H | 0.8825 | |
| 111C | T | H | 0.1079 | |
| 112C | L | H | -0.2072 | |
| 112B | D | H | -1.2583 | |
| 112A | N | H | -1.5735 | |
| 112 | Q | H | -1.5246 | |
| 113 | N | H | -1.7865 | |
| 114 | R | H | 0.0000 | |
| 115 | Y | H | 0.0000 | |
| 116 | E | H | -1.3848 | |
| 117 | D | H | -0.7712 | |
| 118 | W | H | -0.2336 | |
| 119 | G | H | -0.2617 | |
| 120 | Q | H | -0.9543 | |
| 121 | G | H | 0.0000 | |
| 122 | T | H | 0.0000 | |
| 123 | Q | H | -0.8852 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | -0.9769 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -1.4331 | |
| 128 | S | H | -1.2397 |